Index

A

absmin_distance() (in module mvpa.clfs.distance) Absolute() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) absolute_features() (in module mvpa.clfs.warehouse) (in module mvpa.mappers.fx) accepts_dataset_as_samples() (in module mvpa.base.types) (in module mvpa.clfs.base) (in module mvpa.clfs.blr) (in module mvpa.clfs.enet) (in module mvpa.clfs.gda) (in module mvpa.clfs.glmnet) (in module mvpa.clfs.gnb) (in module mvpa.clfs.gpr) (in module mvpa.clfs.knn) (in module mvpa.clfs.lars) (in module mvpa.clfs.plr) (in module mvpa.clfs.ridge) (in module mvpa.clfs.smlr) (in module mvpa.featsel.base) (in module mvpa.mappers.base) (in module mvpa.mappers.boxcar) (in module mvpa.mappers.flatten) (in module mvpa.mappers.mdp_adaptor) (in module mvpa.mappers.projection) (in module mvpa.mappers.prototype) (in module mvpa.mappers.slicing) (in module mvpa.mappers.som) (in module mvpa.mappers.svd) (in module mvpa.mappers.zscore) (in module mvpa.testing.clfs) accepts_samples_as_dataset() (in module mvpa.clfs.base) active (mvpa.base.verbosity.SetLogger attribute) AdaptiveNormal (class in mvpa.clfs.stats) AdaptiveNullDist (class in mvpa.clfs.stats) AdaptiveRDist (class in mvpa.clfs.stats) add() (mvpa.clfs.transerror.SummaryStatistics method) (mvpa.misc.cmdline.OptionGroups method) (mvpa2.misc.cmdline.OptionGroups method) add_center_fa (mvpa.measures.searchlight.Searchlight attribute) add_conversion() (mvpa.kernels.base.Kernel class method) (mvpa.kernels.Kernel class method) (mvpa.kernels.libsvm.Kernel class method) (mvpa.kernels.sg.Kernel class method) add_option_group() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) add_to_dense_vec() (mvpa.kernels.sg.RealFeatures method) AFNI aggregate_features() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) Align_char_features() (mvpa.kernels.sg.RealFeatures method) alternative build procedure analyzer (mvpa.clfs.meta.ProxyClassifierSensitivityAnalyzer attribute) (mvpa.measures.base.ProxyClassifierSensitivityAnalyzer attribute) analyzers (mvpa.measures.base.CombinedFeaturewiseMeasure attribute) API reference append() (mvpa.base.dataset.AttrDataset method) (mvpa.base.node.ChainNode method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.mappers.base.ChainNode method) (mvpa.measures.base.AttrDataset method) (mvpa.misc.plot.ChainNode method) (mvpa.misc.plot.base.ChainNode method) apply_preproc() (mvpa.kernels.sg.RealFeatures method) array() (in module mvpa.clfs.gpr) (in module mvpa.misc.neighborhood) (in module mvpa2.misc.neighborhood) array_whereequal() (in module mvpa.mappers.fx) (in module mvpa.misc.support) (in module mvpa2.misc.support) ArrayCollectable (class in mvpa.base.collections) as_descrete_time() (mvpa.datasets.eventrelated.Event method) (mvpa.datasets.mri.Event method) (mvpa.misc.fsl.Event method) (mvpa.misc.fsl.base.Event method) (mvpa.misc.io.base.Event method) (mvpa.misc.support.Event method) (mvpa2.misc.support.Event method) as_ls() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.libsvm.LSKernel method) (mvpa.kernels.sg.Kernel method) as_np() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.NumpyKernel method) (mvpa.kernels.base.NumpyKernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.np.NumpyKernel method) (mvpa.kernels.sg.Kernel method)

as_raw_ls() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.libsvm.LSKernel method) (mvpa.kernels.sg.Kernel method) as_raw_np() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.NumpyKernel method) (mvpa.kernels.base.NumpyKernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.libsvm.LSKernel method) (mvpa.kernels.np.NumpyKernel method) (mvpa.kernels.sg.Kernel method) as_raw_sg() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.sg.Kernel method) (mvpa.kernels.sg.SGKernel method) as_sg() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.sg.Kernel method) (mvpa.kernels.sg.SGKernel method) as_string() (mvpa.clfs.base.ConfusionMatrix method) (mvpa.clfs.base.RegressionStatistics method) (mvpa.clfs.transerror.ConfusionMatrix method) (mvpa.clfs.transerror.RegressionStatistics method) (mvpa.clfs.transerror.SummaryStatistics method) asarray() (in module mvpa.clfs.gpr) asdict() (mvpa.misc.io.hamster.Hamster method) asobjarray() (in module mvpa.base.hdf5) (in module mvpa.base.types) (in module mvpa.measures.base) assert_almost_equal() (in module mvpa.testing) (in module mvpa.testing.tools) assert_approx_equal() (in module mvpa.testing) (in module mvpa.testing.tools) assert_array_almost_equal() (in module mvpa.testing) (in module mvpa.testing.tools) assert_array_equal() (in module mvpa.testing) (in module mvpa.testing.tools) assert_array_less() (in module mvpa.testing) (in module mvpa.testing.tools) assert_string_equal() (in module mvpa.testing) (in module mvpa.testing.tools) astimezone (mvpa.base.report.datetime attribute) Atlas() (in module mvpa.atlases) (in module mvpa2.atlases) attr_length (mvpa.base.collections.UniformLengthCollection attribute) AttrDataset (class in mvpa.base.dataset) (class in mvpa.datasets.base) (class in mvpa.featsel.helpers) (class in mvpa.measures.base) attrfx (mvpa.mappers.fx.FxMapper attribute) AttributeMap (class in mvpa.clfs.base) (class in mvpa.clfs.meta) (class in mvpa.datasets.formats) (class in mvpa.measures.base) (class in mvpa.misc.attrmap) (class in mvpa.misc.plot) (class in mvpa.misc.plot.base) (class in mvpa2.misc.attrmap) AttributePermutator (class in mvpa.clfs.stats) (class in mvpa.generators.permutation) AttributesCollector (class in mvpa.base.state) auc_error() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) aucs (mvpa.clfs.transerror.ROCCurve attribute) auto_null_dist() (in module mvpa.clfs.stats) (in module mvpa.clfs.transerror) (in module mvpa.measures.base) auto_train (mvpa.base.learner.Learner attribute) (mvpa.clfs.base.Learner attribute) (mvpa.mappers.base.Learner attribute) (mvpa.measures.base.Learner attribute) autocorrelated_noise() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) axis (mvpa.mappers.fx.FxMapper attribute)

B

backports Balancer (class in mvpa.generators.resampling) BaseCollection (in module mvpa.base.state) basename() (in module mvpa.base.verbosity) BaseSearchlight (class in mvpa.measures.gnbsearchlight) (class in mvpa.measures.searchlight) BestDetector (class in mvpa.featsel.base) (class in mvpa.featsel.helpers) (class in mvpa.featsel.ifs) (class in mvpa.featsel.rfe) bestindex (mvpa.featsel.base.BestDetector attribute) (mvpa.featsel.helpers.BestDetector attribute) (mvpa.featsel.ifs.BestDetector attribute) (mvpa.featsel.rfe.BestDetector attribute) bias (mvpa.measures.base.StaticMeasure attribute) biases (mvpa.clfs.smlr.SMLR attribute) (mvpa.clfs.warehouse.SMLR attribute) (mvpa.testing.clfs.SMLR attribute) binary packages, [1] BinaryClassifier (class in mvpa.clfs.meta) BinaryClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base)

BinaryFxNode (class in mvpa.mappers.fx) (class in mvpa.measures.base) Block-averaging, [1] BLR (class in mvpa.clfs.blr) (class in mvpa.clfs.warehouse) BoostedClassifier (class in mvpa.clfs.meta) BoostedClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base) borrowdoc() (in module mvpa.base.collections) (in module mvpa.base.dochelpers) (in module mvpa.base.state) (in module mvpa.mappers.fx) (in module mvpa.mappers.svd) (in module mvpa.misc.neighborhood) (in module mvpa2.misc.neighborhood) borrowkwargs() (in module mvpa.base.dochelpers) (in module mvpa.base.info) (in module mvpa.base.report) (in module mvpa.mappers.detrend) (in module mvpa.mappers.filters) (in module mvpa.mappers.zscore) (in module mvpa.measures.gnbsearchlight) (in module mvpa.measures.searchlight) (in module mvpa.misc.neighborhood) (in module mvpa2.misc.neighborhood) BoxcarMapper (class in mvpa.datasets.eventrelated) (class in mvpa.datasets.mri) (class in mvpa.mappers.boxcar) (class in mvpa.misc.plot.erp) BrainVoyagerRTC (class in mvpa.misc.bv) (class in mvpa.misc.bv.base) build instructions building from source building on Windows

C

C (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) CachedKernel (class in mvpa.kernels) (class in mvpa.kernels.base) CachedQueryEngine (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood) callback (mvpa.measures.base.RepeatedMeasure attribute) cartesian_distance() (in module mvpa.clfs.distance) (in module mvpa.clfs.meta) (in module mvpa.misc.neighborhood) (in module mvpa2.misc.neighborhood) cdf() (mvpa.clfs.stats.AdaptiveRDist method) (mvpa.clfs.stats.FixedNullDist method) (mvpa.clfs.stats.MCNullDist method) (mvpa.clfs.stats.Nonparametric method) (mvpa.clfs.stats.NullDist method) ceil() (in module mvpa.base.dochelpers) (in module mvpa.clfs.transerror) centroid (mvpa.mappers.mdp_adaptor.PCAMapper attribute) cfg ChainMapper (class in mvpa.datasets.base) (class in mvpa.mappers.base) (class in mvpa.mappers.flatten) ChainNode (class in mvpa.base.node) (class in mvpa.mappers.base) (class in mvpa.misc.plot) (class in mvpa.misc.plot.base) change_temporarily() (mvpa.base.state.ConditionalAttributesCollection method) changelog channels (mvpa.datasets.eep.EEPBin attribute) check_value() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) check_values() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) chirp_linear() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) chisquare() (in module mvpa.clfs.transerror) (in module mvpa.misc.stats) (in module mvpa2.misc.stats) Chunk chunks (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) chunks_attr (mvpa.mappers.zscore.ZScoreMapper attribute) citation Classifier (class in mvpa.clfs.base) (class in mvpa.clfs.blr) (class in mvpa.clfs.enet) (class in mvpa.clfs.gda) (class in mvpa.clfs.glmnet) (class in mvpa.clfs.gnb) (class in mvpa.clfs.gpr) (class in mvpa.clfs.knn) (class in mvpa.clfs.lars) (class in mvpa.clfs.meta) (class in mvpa.clfs.plr) (class in mvpa.clfs.ridge) (class in mvpa.clfs.smlr) (class in mvpa.testing.clfs) ClassifierCombiner (class in mvpa.clfs.meta) ClassifierError (class in mvpa.clfs.transerror) (class in mvpa.featsel.rfe) ClassWithCollections (class in mvpa.algorithms.hyperalignment) (class in mvpa.base.node) (class in mvpa.base.state) (class in mvpa.clfs.meta) (class in mvpa.clfs.stats) (class in mvpa.clfs.transerror) (class in mvpa.featsel.helpers) (class in mvpa.kernels.base) (class in mvpa.misc.transformers) (class in mvpa2.misc.transformers) clean() (mvpa.clfs.stats.MCNullDist method) cleanup() (mvpa.kernels.base.Kernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.sg.Kernel method) clear() (mvpa.base.report.Report method) (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) clf (mvpa.clfs.enet.Sensitivity attribute) (mvpa.clfs.glmnet.Sensitivity attribute) (mvpa.clfs.gpr.Sensitivity attribute) (mvpa.clfs.lars.Sensitivity attribute) (mvpa.clfs.meta.ProxyClassifier attribute) (mvpa.clfs.smlr.Sensitivity attribute) (mvpa.clfs.transerror.ClassifierError attribute) (mvpa.featsel.rfe.ClassifierError attribute) (mvpa.featsel.rfe.Sensitivity attribute) (mvpa.measures.base.Sensitivity attribute) clfs (mvpa.clfs.meta.BoostedClassifier attribute) (mvpa.clfs.meta.TreeClassifier attribute) clone() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.testing.clfs.Classifier method) close() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) coarsen_chunks() (in module mvpa.datasets.miscfx) (in module mvpa.generators.partition) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) code swarm collect_nose_tests() (in module mvpa.tests) collect_test_suites() (in module mvpa.tests) collect_unit_tests() (in module mvpa.tests) Collectable (class in mvpa.base.attributes) (class in mvpa.base.collections) (class in mvpa.clfs.transerror) Collection (class in mvpa.base.collections) (class in mvpa.base.state) ColumnData (class in mvpa.misc.bv) (class in mvpa.misc.bv.base) (class in mvpa.misc.fsl) (class in mvpa.misc.fsl.base) (class in mvpa.misc.io) (class in mvpa.misc.io.base) combine() (mvpa.base.report.datetime static method) combined_analyzer (mvpa.clfs.meta.BoostedClassifierSensitivityAnalyzer attribute) (mvpa.measures.base.BoostedClassifierSensitivityAnalyzer attribute)

CombinedClassifier (class in mvpa.clfs.meta) CombinedFeatureSelection (class in mvpa.featsel.base) CombinedFeaturewiseMeasure (class in mvpa.measures.base) combiner (mvpa.clfs.meta.CombinedClassifier attribute) CompoundOneWayAnova (class in mvpa.measures.anova) compute() (mvpa.clfs.transerror.SummaryStatistics method) (mvpa.kernels.CachedKernel method) (mvpa.kernels.Kernel method) (mvpa.kernels.PrecomputedKernel method) (mvpa.kernels.base.CachedKernel method) (mvpa.kernels.base.Kernel method) (mvpa.kernels.base.PrecomputedKernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.libsvm.LSKernel method) (mvpa.kernels.sg.Kernel method) (mvpa.kernels.sg.PrecomputedSGKernel method) compute_gradient_log_marginal_likelihood() (mvpa.clfs.gpr.GPR method) (mvpa.clfs.warehouse.GPR method) compute_gradient_log_marginal_likelihood_logscale() (mvpa.clfs.gpr.GPR method) (mvpa.clfs.warehouse.GPR method) compute_lml_gradient() (mvpa.clfs.gpr.SquaredExponentialKernel method) (mvpa.clfs.warehouse.SquaredExponentialKernel method) (mvpa.kernels.np.ConstantKernel method) (mvpa.kernels.np.ExponentialKernel method) (mvpa.kernels.np.SquaredExponentialKernel method) (mvpa.measures.irelief.ExponentialKernel method) compute_lml_gradient_logscale() (mvpa.clfs.gpr.SquaredExponentialKernel method) (mvpa.clfs.warehouse.SquaredExponentialKernel method) (mvpa.kernels.np.ConstantKernel method) (mvpa.kernels.np.ExponentialKernel method) (mvpa.kernels.np.SquaredExponentialKernel method) (mvpa.measures.irelief.ExponentialKernel method) compute_log_marginal_likelihood() (mvpa.clfs.blr.BLR method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.warehouse.BLR method) (mvpa.clfs.warehouse.GPR method) compute_M_H() (mvpa.measures.irelief.IterativeRelief method) (mvpa.measures.irelief.IterativeRelief_Devel method) computed() (mvpa.clfs.similarity.Similarity method) (mvpa.clfs.similarity.SingleDimensionSimilarity method) (mvpa.clfs.similarity.StreamlineSimilarity method) (mvpa.kernels.Kernel method) (mvpa.kernels.base.Kernel method) (mvpa.kernels.libsvm.Kernel method) (mvpa.kernels.sg.Kernel method) concat_as (mvpa.measures.base.RepeatedMeasure attribute) Conditional Attribute ConditionalAttribute (class in mvpa.algorithms.hyperalignment) (class in mvpa.base.attributes) (class in mvpa.base.learner) (class in mvpa.base.node) (class in mvpa.base.state) (class in mvpa.clfs.base) (class in mvpa.clfs.blr) (class in mvpa.clfs.gda) (class in mvpa.clfs.gnb) (class in mvpa.clfs.gpr) (class in mvpa.clfs.knn) (class in mvpa.clfs.meta) (class in mvpa.clfs.smlr) (class in mvpa.clfs.stats) (class in mvpa.clfs.transerror) (class in mvpa.featsel.base) (class in mvpa.featsel.helpers) (class in mvpa.featsel.ifs) (class in mvpa.featsel.rfe) (class in mvpa.kernels.np) (class in mvpa.measures.base) (class in mvpa.measures.glm) (class in mvpa.measures.searchlight) (class in mvpa.misc.transformers) (class in mvpa2.misc.transformers) ConditionalAttributesCollection (class in mvpa.base.state) config file ConfigManager (class in mvpa.base) (class in mvpa.base.config) configuration confusion (mvpa.clfs.transerror.ClassifierError attribute) (mvpa.featsel.rfe.ClassifierError attribute) Confusion Matrix ConfusionBasedError (class in mvpa.clfs.transerror) ConfusionMatrix (class in mvpa.clfs.base) (class in mvpa.clfs.transerror) ConstantKernel (class in mvpa.kernels.np) convert_value() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) copy() (in module mvpa.featsel.ifs) (in module mvpa.featsel.rfe) (in module mvpa.misc.support) (in module mvpa2.misc.support) (mvpa.base.collections.Collection method) (mvpa.base.collections.UniformLengthCollection method) (mvpa.base.dataset.AttrDataset method) (mvpa.base.state.Collection method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) copy_feature_matrix() (mvpa.kernels.sg.RealFeatures method) corouge() (in module mvpa.clfs.distance) corr_error() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) corr_error_prob() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) CorrCoef (class in mvpa.measures.corrcoef) correlation() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) CorrStability (class in mvpa.measures.corrstability) cov (mvpa.clfs.gda.GDA attribute) Cross-validation, [1], [2] cross-validation, [1], [2], [3] CrossValidation (class in mvpa.measures.base) ctime (mvpa.base.report.datetime attribute) CustomKernel (class in mvpa.kernels) (class in mvpa.kernels.base) CustomPartitioner (class in mvpa.generators.partition) CustomSGKernel (class in mvpa.kernels.sg)

D

DAE (in module mvpa.base.dataset) data (mvpa.datasets.eep.DataReader attribute) (mvpa.misc.io.DataReader attribute) (mvpa.misc.io.base.DataReader attribute) datameasure (mvpa.measures.searchlight.Searchlight attribute) DataReader (class in mvpa.datasets.eep) (class in mvpa.misc.io) (class in mvpa.misc.io.base) Dataset (class in mvpa.algorithms.hyperalignment) (class in mvpa.clfs.base) (class in mvpa.clfs.glmnet) (class in mvpa.clfs.gpr) (class in mvpa.clfs.knn) (class in mvpa.clfs.lars) (class in mvpa.clfs.smlr) (class in mvpa.clfs.stats) (class in mvpa.datasets.base) (class in mvpa.datasets.eep) (class in mvpa.datasets.formats) (class in mvpa.datasets.miscfx) (class in mvpa.datasets.mri) (class in mvpa.mappers.filters) (class in mvpa.mappers.fx) (class in mvpa.mappers.procrustean) (class in mvpa.mappers.zscore) (class in mvpa.measures.anova) (class in mvpa.measures.base) (class in mvpa.measures.corrcoef) (class in mvpa.measures.glm) (class in mvpa.measures.gnbsearchlight) (class in mvpa.measures.irelief) (class in mvpa.measures.noiseperturbation) (class in mvpa.misc.data_generators) (class in mvpa.testing.clfs) (class in mvpa.testing.datasets) (class in mvpa2.misc.data_generators) Dataset attribute Dataset concepts Dataset Database DatasetAttribute (class in mvpa.base.collections) (class in mvpa.datasets.base) (class in mvpa.datasets.mri) DatasetAttributeExtractor (class in mvpa.base.dataset) (class in mvpa.mappers.mdp_adaptor) DatasetAttributesCollection (class in mvpa.base.collections) (class in mvpa.base.dataset) (class in mvpa.datasets.base) datasetmethod() (in module mvpa.base.dataset) (in module mvpa.datasets.miscfx) date (mvpa.base.report.datetime attribute) datetime (class in mvpa.base.report) Debian, [1] debug, [1] DebugLogger (class in mvpa.base) (class in mvpa.base.verbosity) Decoding deepcopy() (in module mvpa.algorithms.hyperalignment) (in module mvpa.clfs.base) (in module mvpa.datasets.mri) (in module mvpa.measures.noiseperturbation) (in module mvpa.misc.support) (in module mvpa2.misc.support) default (mvpa.algorithms.hyperalignment.Parameter attribute) (mvpa.base.param.Parameter attribute) (mvpa.clfs.base.Parameter attribute) (mvpa.clfs.gda.Parameter attribute) (mvpa.clfs.glmnet.Parameter attribute) (mvpa.clfs.gnb.Parameter attribute) (mvpa.clfs.gpr.Parameter attribute) (mvpa.clfs.meta.Parameter attribute) (mvpa.clfs.smlr.Parameter attribute) (mvpa.kernels.base.Parameter attribute) (mvpa.kernels.libsvm.Parameter attribute) (mvpa.kernels.np.Parameter attribute) (mvpa.kernels.sg.Parameter attribute) descr (mvpa.algorithms.hyperalignment.ClassWithCollections attribute) (mvpa.base.node.ClassWithCollections attribute) (mvpa.base.state.ClassWithCollections attribute) (mvpa.clfs.meta.ClassWithCollections attribute) (mvpa.clfs.stats.ClassWithCollections attribute) (mvpa.clfs.transerror.ClassWithCollections attribute) (mvpa.featsel.helpers.ClassWithCollections attribute) (mvpa.kernels.base.ClassWithCollections attribute) (mvpa.misc.transformers.ClassWithCollections attribute) (mvpa2.misc.transformers.ClassWithCollections attribute) design2labels() (in module mvpa.misc.io) (in module mvpa.misc.io.base) destroy() (mvpa.misc.cmdline.OptionGroup method) (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionGroup method) (mvpa2.misc.cmdline.OptionParser method) detrending

development development snapshot dirname() (in module mvpa.base.verbosity) disable() (mvpa.base.state.ConditionalAttributesCollection method) disable_interspersed_args() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) dissimilarity matrix distance (mvpa.atlases.ReferencesAtlas attribute) (mvpa2.atlases.ReferencesAtlas attribute) distance_func (mvpa.measures.gnbsearchlight.Sphere attribute) (mvpa.measures.searchlight.Sphere attribute) (mvpa.misc.neighborhood.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) DistPValue (class in mvpa.misc.transformers) (class in mvpa2.misc.transformers) Documentation overview dot() (in module mvpa.clfs.gda) (in module mvpa.clfs.gnb) double_gamma_hrf() (in module mvpa.misc.fx) (in module mvpa2.misc.fx) Download dshape (mvpa.datasets.base.StaticFeatureSelection attribute) (mvpa.featsel.base.StaticFeatureSelection attribute) (mvpa.featsel.ifs.StaticFeatureSelection attribute) (mvpa.mappers.flatten.StaticFeatureSelection attribute) (mvpa.measures.searchlight.StaticFeatureSelection attribute) DSMatrix (class in mvpa.measures.ds) (class in mvpa.misc.stats) (class in mvpa2.misc.stats) DSMMeasure (class in mvpa.measures.ds) dst (mvpa.base.report.datetime attribute) dt (mvpa.datasets.eep.EEPBin attribute) dtype (mvpa.mappers.zscore.ZScoreMapper attribute) dual_gaussian() (in module mvpa.misc.fx) (in module mvpa2.misc.fx) dumb_feature_binary_dataset() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) dumb_feature_dataset() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) dump() (mvpa.misc.io.hamster.Hamster method) durations (mvpa.misc.fsl.base.FslEV3 attribute) (mvpa.misc.fsl.FslEV3 attribute)

E

eep_dataset() (in module mvpa.datasets.eep) EEPBin (class in mvpa.datasets.eep) element_sizes (mvpa.measures.gnbsearchlight.Sphere attribute) (mvpa.measures.searchlight.Sphere attribute) (mvpa.misc.neighborhood.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) ElementSelector (class in mvpa.featsel.helpers) (class in mvpa.mappers.procrustean) (class in mvpa.mappers.svd) enable() (mvpa.base.state.ConditionalAttributesCollection method) enable_interspersed_args() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) enabled (mvpa.algorithms.hyperalignment.ConditionalAttribute attribute) (mvpa.base.attributes.ConditionalAttribute attribute) (mvpa.base.learner.ConditionalAttribute attribute) (mvpa.base.node.ConditionalAttribute attribute) (mvpa.base.state.ConditionalAttribute attribute) (mvpa.base.state.ConditionalAttributesCollection attribute) (mvpa.clfs.base.ConditionalAttribute attribute) (mvpa.clfs.blr.ConditionalAttribute attribute) (mvpa.clfs.gda.ConditionalAttribute attribute) (mvpa.clfs.gnb.ConditionalAttribute attribute) (mvpa.clfs.gpr.ConditionalAttribute attribute) (mvpa.clfs.knn.ConditionalAttribute attribute) (mvpa.clfs.meta.ConditionalAttribute attribute) (mvpa.clfs.smlr.ConditionalAttribute attribute) (mvpa.clfs.stats.ConditionalAttribute attribute) (mvpa.clfs.transerror.ConditionalAttribute attribute) (mvpa.featsel.base.ConditionalAttribute attribute) (mvpa.featsel.helpers.ConditionalAttribute attribute) (mvpa.featsel.ifs.ConditionalAttribute attribute) (mvpa.featsel.rfe.ConditionalAttribute attribute) (mvpa.kernels.np.ConditionalAttribute attribute) (mvpa.measures.base.ConditionalAttribute attribute) (mvpa.measures.glm.ConditionalAttribute attribute) (mvpa.measures.searchlight.ConditionalAttribute attribute) (mvpa.misc.transformers.ConditionalAttribute attribute) (mvpa2.misc.transformers.ConditionalAttribute attribute) ENET (class in mvpa.clfs.enet) ENETWeights (class in mvpa.clfs.enet) enhanced_doc_string() (in module mvpa.base.dochelpers) (in module mvpa.base.state) (in module mvpa.clfs.transerror) (in module mvpa.mappers.projection) (in module mvpa.measures.base) (in module mvpa.misc.io.base) environment variable MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS Epoch eq_() (in module mvpa.testing) (in module mvpa.testing.tools) equal_default (mvpa.algorithms.hyperalignment.Parameter attribute) (mvpa.base.param.Parameter attribute) (mvpa.clfs.base.Parameter attribute) (mvpa.clfs.gda.Parameter attribute) (mvpa.clfs.glmnet.Parameter attribute) (mvpa.clfs.gnb.Parameter attribute) (mvpa.clfs.gpr.Parameter attribute) (mvpa.clfs.meta.Parameter attribute) (mvpa.clfs.smlr.Parameter attribute) (mvpa.kernels.base.Parameter attribute) (mvpa.kernels.libsvm.Parameter attribute) (mvpa.kernels.np.Parameter attribute) (mvpa.kernels.sg.Parameter attribute) error (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.base.RegressionStatistics attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) (mvpa.clfs.transerror.RegressionStatistics attribute) (mvpa.clfs.transerror.SummaryStatistics attribute)

error() (in module mvpa.base) (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) errorfx (mvpa.measures.base.CrossValidation attribute) (mvpa.measures.gnbsearchlight.GNBSearchlight attribute) escape_xml() (in module mvpa.base.report) Event (class in mvpa.datasets.eventrelated) (class in mvpa.datasets.mri) (class in mvpa.misc.fsl) (class in mvpa.misc.fsl.base) (class in mvpa.misc.io.base) (class in mvpa.misc.support) (class in mvpa2.misc.support) event-related fMRI, [1] eventrelated_dataset() (in module mvpa.datasets.eventrelated) example examples Exemplar exists() (in module mvpa.base.dochelpers) (in module mvpa.base.externals) (in module mvpa.kernels.sg) exit() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) expand_prog_name() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) ExponentialKernel (class in mvpa.kernels.np) (class in mvpa.measures.irelief) extent (mvpa.misc.fsl.melodic.MelodicResults attribute)

F

Feature Feature attribute feature selection Feature Selection feature_ids (mvpa.clfs.enet.Sensitivity attribute) (mvpa.clfs.glmnet.Sensitivity attribute) (mvpa.clfs.gpr.Sensitivity attribute) (mvpa.clfs.lars.Sensitivity attribute) (mvpa.clfs.smlr.Sensitivity attribute) (mvpa.featsel.rfe.Sensitivity attribute) (mvpa.measures.base.Sensitivity attribute) FeatureAttribute (class in mvpa.base.collections) (class in mvpa.datasets.base) FeatureAttributesCollection (class in mvpa.base.collections) (class in mvpa.base.dataset) (class in mvpa.datasets.base) FeatureSelection (class in mvpa.featsel.base) FeatureSelectionClassifier (class in mvpa.clfs.meta) (class in mvpa.clfs.warehouse) FeatureSelectionClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base) FeaturewiseMeasure (class in mvpa.measures.anova) (class in mvpa.measures.base) (class in mvpa.measures.corrcoef) (class in mvpa.measures.corrstability) (class in mvpa.measures.glm) (class in mvpa.measures.irelief) (class in mvpa.measures.noiseperturbation) (class in mvpa.measures.pls) (class in mvpa.testing.clfs) Fedora felements (mvpa.clfs.warehouse.FractionTailSelector attribute) (mvpa.featsel.base.FractionTailSelector attribute) (mvpa.featsel.helpers.FractionTailSelector attribute) (mvpa.featsel.rfe.FractionTailSelector attribute) fft_resample() (in module mvpa.mappers.filters) FFTResampleMapper (class in mvpa.mappers.filters) figure() (mvpa.base.report.Report method) figures() (mvpa.base.report.Report method) filespec_to_file_map() (mvpa.misc.plot.lightbox.SpatialImage class method) filespec_to_files() (mvpa.misc.plot.lightbox.SpatialImage class method) fill() (mvpa.base.state.TextWrapper method) find() (mvpa.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) find_collection() (mvpa.algorithms.hyperalignment.Dataset method) (mvpa.clfs.base.Dataset method) (mvpa.clfs.glmnet.Dataset method) (mvpa.clfs.gpr.Dataset method) (mvpa.clfs.knn.Dataset method) (mvpa.clfs.lars.Dataset method) (mvpa.clfs.smlr.Dataset method) (mvpa.clfs.stats.Dataset method) (mvpa.datasets.base.Dataset method) (mvpa.datasets.eep.Dataset method) (mvpa.datasets.formats.Dataset method) (mvpa.datasets.miscfx.Dataset method) (mvpa.datasets.mri.Dataset method) (mvpa.mappers.filters.Dataset method) (mvpa.mappers.fx.Dataset method) (mvpa.mappers.procrustean.Dataset method) (mvpa.mappers.zscore.Dataset method) (mvpa.measures.anova.Dataset method) (mvpa.measures.base.Dataset method) (mvpa.measures.corrcoef.Dataset method) (mvpa.measures.glm.Dataset method) (mvpa.measures.gnbsearchlight.Dataset method) (mvpa.measures.irelief.Dataset method) (mvpa.measures.noiseperturbation.Dataset method) (mvpa.misc.data_generators.Dataset method) (mvpa.testing.clfs.Dataset method) (mvpa.testing.datasets.Dataset method) (mvpa2.misc.data_generators.Dataset method) find_events() (in module mvpa.datasets.eventrelated) first_axis_mean() (in module mvpa.clfs.meta) (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) first_axis_sum_not_zero() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) fit() (mvpa.clfs.stats.AdaptiveNullDist method) (mvpa.clfs.stats.FixedNullDist method) (mvpa.clfs.stats.MCNullDist method) (mvpa.clfs.stats.Nonparametric static method) (mvpa.clfs.stats.NullDist method) (mvpa.clfs.stats.rv_semifrozen method) fit2histogram() (in module mvpa.misc.fx) (in module mvpa2.misc.fx) FixedErrorThresholdStopCrit (class in mvpa.featsel.helpers) FixedNElementTailSelector (class in mvpa.clfs.warehouse) (class in mvpa.featsel.helpers) (class in mvpa.featsel.ifs) FixedNullDist (class in mvpa.clfs.stats) FlattenMapper (class in mvpa.datasets.base) (class in mvpa.datasets.eventrelated) (class in mvpa.datasets.mri) (class in mvpa.mappers.flatten) floor() (in module mvpa.featsel.helpers) flowbreak() (mvpa.base.report.Report method)

flush() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) fMRI fmri_dataset() (in module mvpa.datasets.mri) force_train (mvpa.base.learner.Learner attribute) (mvpa.clfs.base.Learner attribute) (mvpa.mappers.base.Learner attribute) (mvpa.measures.base.Learner attribute) format_epilog() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) format_help() (mvpa.misc.cmdline.OptionGroup method) (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionGroup method) (mvpa2.misc.cmdline.OptionParser method) format_option_help() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) forward() (mvpa.datasets.base.ChainMapper method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.Mapper method) (mvpa.mappers.detrend.Mapper method) (mvpa.mappers.filters.Mapper method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.mappers.flatten.Mapper method) (mvpa.mappers.fx.Mapper method) (mvpa.mappers.mdp_adaptor.Mapper method) (mvpa.mappers.projection.Mapper method) (mvpa.mappers.slicing.Mapper method) (mvpa.mappers.som.Mapper method) (mvpa.mappers.wavelet.Mapper method) (mvpa.mappers.zscore.Mapper method) forward1() (mvpa.datasets.base.ChainMapper method) (mvpa.datasets.eventrelated.BoxcarMapper method) (mvpa.datasets.mri.BoxcarMapper method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.boxcar.Mapper method) (mvpa.mappers.detrend.Mapper method) (mvpa.mappers.filters.Mapper method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.mappers.flatten.Mapper method) (mvpa.mappers.fx.Mapper method) (mvpa.mappers.mdp_adaptor.Mapper method) (mvpa.mappers.projection.Mapper method) (mvpa.mappers.slicing.Mapper method) (mvpa.mappers.som.Mapper method) (mvpa.mappers.wavelet.Mapper method) (mvpa.mappers.zscore.Mapper method) (mvpa.misc.plot.erp.BoxcarMapper method) FractionTailSelector (class in mvpa.clfs.warehouse) (class in mvpa.featsel.base) (class in mvpa.featsel.helpers) (class in mvpa.featsel.rfe) free software free_feature_matrix() (mvpa.kernels.sg.RealFeatures method) free_feature_vector() (mvpa.kernels.sg.RealFeatures method) free_features() (mvpa.kernels.sg.RealFeatures method) friedmanchisquare() (in module mvpa.clfs.transerror) from_channeltimeseries() (mvpa.algorithms.hyperalignment.Dataset class method) (mvpa.clfs.base.Dataset class method) (mvpa.clfs.glmnet.Dataset class method) (mvpa.clfs.gpr.Dataset class method) (mvpa.clfs.knn.Dataset class method) (mvpa.clfs.lars.Dataset class method) (mvpa.clfs.smlr.Dataset class method) (mvpa.clfs.stats.Dataset class method) (mvpa.datasets.base.Dataset class method) (mvpa.datasets.eep.Dataset class method) (mvpa.datasets.formats.Dataset class method) (mvpa.datasets.miscfx.Dataset class method) (mvpa.datasets.mri.Dataset class method) (mvpa.mappers.filters.Dataset class method) (mvpa.mappers.fx.Dataset class method) (mvpa.mappers.procrustean.Dataset class method) (mvpa.mappers.zscore.Dataset class method) (mvpa.measures.anova.Dataset class method) (mvpa.measures.base.Dataset class method) (mvpa.measures.corrcoef.Dataset class method) (mvpa.measures.glm.Dataset class method) (mvpa.measures.gnbsearchlight.Dataset class method) (mvpa.measures.irelief.Dataset class method) (mvpa.measures.noiseperturbation.Dataset class method) (mvpa.misc.data_generators.Dataset class method) (mvpa.testing.clfs.Dataset class method) (mvpa.testing.datasets.Dataset class method) (mvpa2.misc.data_generators.Dataset class method) from_file_map() (mvpa.misc.plot.lightbox.SpatialImage class method) from_filename() (mvpa.misc.plot.lightbox.SpatialImage class method) from_files() (mvpa.misc.plot.lightbox.SpatialImage class method) from_filespec() (mvpa.misc.plot.lightbox.SpatialImage class method) from_hdf5() (mvpa.base.dataset.AttrDataset class method) (mvpa.datasets.base.AttrDataset class method) (mvpa.featsel.helpers.AttrDataset class method) (mvpa.measures.base.AttrDataset class method) from_image() (mvpa.misc.plot.lightbox.SpatialImage class method) from_lightsvm_format() (in module mvpa.datasets.formats) from_wizard() (mvpa.algorithms.hyperalignment.Dataset class method) (mvpa.clfs.base.Dataset class method) (mvpa.clfs.glmnet.Dataset class method) (mvpa.clfs.gpr.Dataset class method) (mvpa.clfs.knn.Dataset class method) (mvpa.clfs.lars.Dataset class method) (mvpa.clfs.smlr.Dataset class method) (mvpa.clfs.stats.Dataset class method) (mvpa.datasets.base.Dataset class method) (mvpa.datasets.eep.Dataset class method) (mvpa.datasets.formats.Dataset class method) (mvpa.datasets.miscfx.Dataset class method) (mvpa.datasets.mri.Dataset class method) (mvpa.mappers.filters.Dataset class method) (mvpa.mappers.fx.Dataset class method) (mvpa.mappers.procrustean.Dataset class method) (mvpa.mappers.zscore.Dataset class method) (mvpa.measures.anova.Dataset class method) (mvpa.measures.base.Dataset class method) (mvpa.measures.corrcoef.Dataset class method) (mvpa.measures.glm.Dataset class method) (mvpa.measures.gnbsearchlight.Dataset class method) (mvpa.measures.irelief.Dataset class method) (mvpa.measures.noiseperturbation.Dataset class method) (mvpa.misc.data_generators.Dataset class method) (mvpa.testing.clfs.Dataset class method) (mvpa.testing.datasets.Dataset class method) (mvpa2.misc.data_generators.Dataset class method) fromtimestamp() (mvpa.base.report.datetime static method) FSL, [1] FslEV3 (class in mvpa.misc.fsl) (class in mvpa.misc.fsl.base) FslGLMDesign (class in mvpa.misc.fsl) (class in mvpa.misc.fsl.base) FSLProbabilisticAtlas (class in mvpa.atlases) (class in mvpa2.atlases) fx (mvpa.mappers.fx.FxMapper attribute) fxargs (mvpa.mappers.fx.FxMapper attribute) FxMapper (class in mvpa.mappers.fx)

G

GDA (class in mvpa.clfs.gda) Generalization GeneralizedLinearKernel (class in mvpa.clfs.gpr) (class in mvpa.clfs.warehouse) (class in mvpa.kernels.np) generate() (mvpa.base.learner.Node method) (mvpa.base.node.ChainNode method) (mvpa.base.node.Node method) (mvpa.clfs.meta.Splitter method) (mvpa.clfs.stats.AttributePermutator method) (mvpa.generators.partition.Node method) (mvpa.generators.partition.Partitioner method) (mvpa.generators.permutation.AttributePermutator method) (mvpa.generators.permutation.Node method) (mvpa.generators.resampling.Balancer method) (mvpa.generators.resampling.Node method) (mvpa.generators.splitters.Node method) (mvpa.generators.splitters.Splitter method) (mvpa.mappers.base.ChainNode method) (mvpa.mappers.filters.Splitter method) (mvpa.mappers.fx.Node method) (mvpa.mappers.slicing.Node method) (mvpa.measures.base.Node method) (mvpa.measures.base.Splitter method) (mvpa.measures.gnbsearchlight.Splitter method) (mvpa.misc.plot.ChainNode method) (mvpa.misc.plot.Splitter method) (mvpa.misc.plot.base.ChainNode method) (mvpa.misc.plot.base.Splitter method) generate_testing_datasets() (in module mvpa.testing.datasets) generator (mvpa.measures.base.RepeatedMeasure attribute) (mvpa.measures.gnbsearchlight.GNBSearchlight attribute) get() (mvpa.base.config.ConfigManager method) (mvpa.base.ConfigManager method) get_affine() (mvpa.misc.plot.lightbox.SpatialImage method) get_as_dtype() (mvpa.base.config.ConfigManager method) (mvpa.base.ConfigManager method) get_attr() (mvpa.algorithms.hyperalignment.Dataset method) (mvpa.clfs.base.Dataset method) (mvpa.clfs.glmnet.Dataset method) (mvpa.clfs.gpr.Dataset method) (mvpa.clfs.knn.Dataset method) (mvpa.clfs.lars.Dataset method) (mvpa.clfs.smlr.Dataset method) (mvpa.clfs.stats.Dataset method) (mvpa.datasets.base.Dataset method) (mvpa.datasets.eep.Dataset method) (mvpa.datasets.formats.Dataset method) (mvpa.datasets.miscfx.Dataset method) (mvpa.datasets.mri.Dataset method) (mvpa.mappers.filters.Dataset method) (mvpa.mappers.fx.Dataset method) (mvpa.mappers.procrustean.Dataset method) (mvpa.mappers.zscore.Dataset method) (mvpa.measures.anova.Dataset method) (mvpa.measures.base.Dataset method) (mvpa.measures.corrcoef.Dataset method) (mvpa.measures.glm.Dataset method) (mvpa.measures.gnbsearchlight.Dataset method) (mvpa.measures.irelief.Dataset method) (mvpa.measures.noiseperturbation.Dataset method) (mvpa.misc.data_generators.Dataset method) (mvpa.testing.clfs.Dataset method) (mvpa.testing.datasets.Dataset method) (mvpa2.misc.data_generators.Dataset method) get_break_points() (in module mvpa.misc.support) (in module mvpa2.misc.support) get_data() (mvpa.misc.plot.lightbox.SpatialImage method) get_data_dtype() (mvpa.misc.plot.lightbox.SpatialImage method) get_default_values() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_description() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_ev() (mvpa.misc.fsl.base.FslEV3 method) (mvpa.misc.fsl.FslEV3 method) get_feature_matrix() (mvpa.kernels.sg.RealFeatures method) get_feature_vector() (mvpa.kernels.sg.RealFeatures method) get_filename() (mvpa.misc.plot.lightbox.SpatialImage method) get_full_matrix() (mvpa.measures.ds.DSMatrix method) (mvpa.misc.stats.DSMatrix method) (mvpa2.misc.stats.DSMatrix method) get_header() (mvpa.misc.plot.lightbox.SpatialImage method) get_labels_map() (mvpa.clfs.base.ConfusionMatrix method) (mvpa.clfs.transerror.ConfusionMatrix method) get_limit_filter() (in module mvpa.generators.permutation) (in module mvpa.generators.resampling) (in module mvpa.misc.support) (in module mvpa2.misc.support) get_majority_vote() (mvpa.clfs.knn.kNN method) (mvpa.clfs.warehouse.kNN method) (mvpa.testing.clfs.kNN method) get_map() (mvpa.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) get_mapped() (mvpa.algorithms.hyperalignment.Dataset method) (mvpa.clfs.base.Dataset method) (mvpa.clfs.glmnet.Dataset method) (mvpa.clfs.gpr.Dataset method) (mvpa.clfs.knn.Dataset method) (mvpa.clfs.lars.Dataset method) (mvpa.clfs.smlr.Dataset method) (mvpa.clfs.stats.Dataset method) (mvpa.datasets.base.Dataset method) (mvpa.datasets.eep.Dataset method) (mvpa.datasets.formats.Dataset method) (mvpa.datasets.miscfx.Dataset method) (mvpa.datasets.mri.Dataset method) (mvpa.mappers.filters.Dataset method) (mvpa.mappers.fx.Dataset method) (mvpa.mappers.procrustean.Dataset method) (mvpa.mappers.zscore.Dataset method) (mvpa.measures.anova.Dataset method) (mvpa.measures.base.Dataset method) (mvpa.measures.corrcoef.Dataset method) (mvpa.measures.glm.Dataset method) (mvpa.measures.gnbsearchlight.Dataset method) (mvpa.measures.irelief.Dataset method) (mvpa.measures.noiseperturbation.Dataset method) (mvpa.misc.data_generators.Dataset method) (mvpa.testing.clfs.Dataset method) (mvpa.testing.datasets.Dataset method) (mvpa2.misc.data_generators.Dataset method) get_maps() (mvpa.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) get_metric() (mvpa.measures.ds.DSMatrix method) (mvpa.misc.stats.DSMatrix method) (mvpa2.misc.stats.DSMatrix method) get_mv_pattern() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) get_nelements_per_value() (in module mvpa.datasets.miscfx) (in module mvpa.generators.resampling) (in module mvpa.misc.support) (in module mvpa2.misc.support) get_nsamples_per_attr() (in module mvpa.datasets.miscfx) (in module mvpa.mappers.zscore) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) get_num_features() (mvpa.kernels.sg.RealFeatures method) get_opt_string() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) get_option_group() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_partition_specs() (mvpa.generators.partition.Partitioner method) get_partitions_attr() (mvpa.generators.partition.Partitioner method)

get_postproc() (mvpa.base.learner.Node method) (mvpa.base.node.Node method) (mvpa.generators.partition.Node method) (mvpa.generators.permutation.Node method) (mvpa.generators.resampling.Node method) (mvpa.generators.splitters.Node method) (mvpa.mappers.fx.Node method) (mvpa.mappers.slicing.Node method) (mvpa.measures.base.Node method) get_probmap() (mvpa.misc.fsl.melodic.MelodicResults method) get_prog_name() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_pymvpa_gitversion() (in module mvpa.base.info) get_random_rotation() (in module mvpa.testing.datasets) get_raw_tmodes() (mvpa.misc.fsl.melodic.MelodicResults method) get_samples_by_attr() (in module mvpa.clfs.meta) (in module mvpa.datasets.miscfx) (in module mvpa.mappers.zscore) (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) get_samples_per_chunk_target() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) get_sensitivity_analyzer() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.enet.ENET method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.lars.LARS method) (mvpa.clfs.meta.BoostedClassifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.meta.ProxyClassifier method) (mvpa.clfs.meta.SplitClassifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.clfs.smlr.SMLR method) (mvpa.clfs.warehouse.GPR method) (mvpa.clfs.warehouse.SMLR method) (mvpa.clfs.warehouse.SplitClassifier method) (mvpa.testing.clfs.Classifier method) (mvpa.testing.clfs.SMLR method) get_space() (mvpa.base.learner.Node method) (mvpa.base.node.Node method) (mvpa.generators.partition.Node method) (mvpa.generators.permutation.Node method) (mvpa.generators.resampling.Node method) (mvpa.generators.splitters.Node method) (mvpa.mappers.fx.Node method) (mvpa.mappers.slicing.Node method) (mvpa.measures.base.Node method) get_thresh_zstat() (mvpa.misc.fsl.melodic.MelodicResults method) get_tmodes() (mvpa.misc.fsl.melodic.MelodicResults method) get_transposed() (mvpa.kernels.sg.RealFeatures method) get_triangle() (mvpa.measures.ds.DSMatrix method) (mvpa.misc.stats.DSMatrix method) (mvpa2.misc.stats.DSMatrix method) get_usage() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_vector_form() (mvpa.measures.ds.DSMatrix method) (mvpa.misc.stats.DSMatrix method) (mvpa2.misc.stats.DSMatrix method) get_version() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) get_weighted_vote() (mvpa.clfs.knn.kNN method) (mvpa.clfs.warehouse.kNN method) (mvpa.testing.clfs.kNN method) getboolean() (mvpa.base.config.ConfigManager method) (mvpa.base.ConfigManager method) getpid() (in module mvpa.base.verbosity) getvalue() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) Git, [1] Git repository GLM (class in mvpa.measures.glm) GLMNET_C (class in mvpa.clfs.glmnet) GLMNET_R (class in mvpa.clfs.glmnet) GLMNETWeights (class in mvpa.clfs.glmnet) GNB (class in mvpa.clfs.gnb) (class in mvpa.clfs.warehouse) gnb (mvpa.measures.gnbsearchlight.GNBSearchlight attribute) GNBSearchlight (class in mvpa.measures.gnbsearchlight) GPR, [1] (class in mvpa.clfs.gpr) (class in mvpa.clfs.warehouse) GPRLinearWeights (class in mvpa.clfs.gpr) gradient() (mvpa.kernels.np.ExponentialKernel method) (mvpa.kernels.np.Matern_3_2Kernel method) (mvpa.kernels.np.RationalQuadraticKernel method) (mvpa.measures.irelief.ExponentialKernel method) grand_mean() (in module mvpa.algorithms.hyperalignment) (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) griddata() (in module mvpa.misc.plot.topo) group_kwargs() (in module mvpa.clfs.meta) (in module mvpa.measures.base) (in module mvpa.misc.args) (in module mvpa2.misc.args)

H

h5load() (in module mvpa.base.hdf5) h5save() (in module mvpa.base.hdf5) HalfPartitioner (class in mvpa.generators.partition) Hamster (class in mvpa.misc.io.hamster) handle_docstring() (in module mvpa.base.dochelpers) handlers (mvpa.base.verbosity.Logger attribute) harvest_attribs (mvpa.base.state.Harvestable attribute) (mvpa.clfs.meta.Harvestable attribute) Harvestable (class in mvpa.base.state) (class in mvpa.clfs.meta) hdf2obj() (in module mvpa.base.hdf5)

header_class (mvpa.misc.plot.lightbox.SpatialImage attribute) history hlcuster HollowSamples (class in mvpa.datasets.base) (class in mvpa.testing.datasets) HollowSphere (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood) hour (mvpa.base.report.datetime attribute) hstack() (in module mvpa.base.dataset) (in module mvpa.measures.base) (in module mvpa.measures.searchlight) Hyperalignment (class in mvpa.algorithms.hyperalignment)

I

ic (mvpa.misc.fsl.melodic.MelodicResults attribute) ICAMapper (class in mvpa.mappers.mdp_adaptor) icstats (mvpa.misc.fsl.melodic.MelodicResults attribute) Identity() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) idhash (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) idhash() (in module mvpa.clfs.base) (in module mvpa.misc.support) (in module mvpa2.misc.support) idhash_() (in module mvpa.datasets.base) (in module mvpa.misc.neighborhood) (in module mvpa2.misc.neighborhood) IFS (class in mvpa.featsel.ifs) indent (mvpa.base.LevelLogger attribute) (mvpa.base.verbosity.LevelLogger attribute) indent_doc() (in module mvpa.clfs.knn) (in module mvpa.misc.support) (in module mvpa2.misc.support) IndexedCollectable (class in mvpa.base.attributes) (class in mvpa.base.param) (class in mvpa.base.state) IndexQueryEngine (class in mvpa.measures.gnbsearchlight) (class in mvpa.measures.searchlight) (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood) indexsum (mvpa.measures.gnbsearchlight.GNBSearchlight attribute) inds_to_coo() (in module mvpa.measures.gnbsearchlight) init_origids() (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) inner_radius (mvpa.misc.neighborhood.HollowSphere attribute) (mvpa2.misc.neighborhood.HollowSphere attribute) installation instance_to_filename() (mvpa.misc.plot.lightbox.SpatialImage class method) intensities (mvpa.misc.fsl.base.FslEV3 attribute) (mvpa.misc.fsl.FslEV3 attribute) internals (mvpa.clfs.warehouse.Warehouse attribute) introduction invariant features inverse_cmap() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base)

IPython is_active() (mvpa.base.state.ConditionalAttributesCollection method) is_datasetlike() (in module mvpa.base.dataset) (in module mvpa.base.learner) (in module mvpa.base.types) (in module mvpa.clfs.base) (in module mvpa.clfs.stats) (in module mvpa.kernels.base) (in module mvpa.mappers.base) is_default (mvpa.algorithms.hyperalignment.Parameter attribute) (mvpa.base.param.Parameter attribute) (mvpa.clfs.base.Parameter attribute) (mvpa.clfs.gda.Parameter attribute) (mvpa.clfs.glmnet.Parameter attribute) (mvpa.clfs.gnb.Parameter attribute) (mvpa.clfs.gpr.Parameter attribute) (mvpa.clfs.meta.Parameter attribute) (mvpa.clfs.smlr.Parameter attribute) (mvpa.kernels.base.Parameter attribute) (mvpa.kernels.libsvm.Parameter attribute) (mvpa.kernels.np.Parameter attribute) (mvpa.kernels.sg.Parameter attribute) is_enabled() (mvpa.base.state.ConditionalAttributesCollection method) is_in_volume() (in module mvpa.mappers.flatten) (in module mvpa.mappers.mdp_adaptor) (in module mvpa.misc.support) (in module mvpa2.misc.support) is_set (mvpa.base.attributes.IndexedCollectable attribute) (mvpa.base.param.IndexedCollectable attribute) (mvpa.base.state.IndexedCollectable attribute) is_set() (mvpa.base.state.Collection method) is_sorted() (in module mvpa.misc.support) (in module mvpa2.misc.support) is_trained (mvpa.base.learner.Learner attribute) (mvpa.clfs.base.Learner attribute) (mvpa.clfs.enet.Sensitivity attribute) (mvpa.clfs.glmnet.Sensitivity attribute) (mvpa.clfs.gpr.Sensitivity attribute) (mvpa.clfs.lars.Sensitivity attribute) (mvpa.clfs.smlr.Sensitivity attribute) (mvpa.featsel.rfe.Sensitivity attribute) (mvpa.mappers.base.Learner attribute) (mvpa.mappers.fx.FxMapper attribute) (mvpa.measures.base.Learner attribute) (mvpa.measures.base.RepeatedMeasure attribute) (mvpa.measures.base.Sensitivity attribute) (mvpa.measures.base.TransferMeasure attribute) (mvpa.measures.corrcoef.CorrCoef attribute) (mvpa.measures.glm.GLM attribute) (mvpa.measures.gnbsearchlight.BaseSearchlight attribute) (mvpa.measures.irelief.IterativeRelief attribute) (mvpa.measures.irelief.IterativeReliefOnline attribute) (mvpa.measures.irelief.IterativeReliefOnline_Devel attribute) (mvpa.measures.irelief.IterativeRelief_Devel attribute) (mvpa.measures.noiseperturbation.NoisePerturbationSensitivity attribute) (mvpa.measures.searchlight.BaseSearchlight attribute) is_trained() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.testing.clfs.Classifier method) isatty() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) isoformat (mvpa.base.report.datetime attribute) isSequenceType() (in module mvpa.base.collections) (in module mvpa.datasets.miscfx) (in module mvpa.mappers.detrend) (in module mvpa.misc.attrmap) (in module mvpa.misc.support) (in module mvpa2.misc.attrmap) (in module mvpa2.misc.support) istest() (in module mvpa.testing) (in module mvpa.testing.tools) item() (mvpa.algorithms.hyperalignment.Dataset method) (mvpa.clfs.base.Dataset method) (mvpa.clfs.glmnet.Dataset method) (mvpa.clfs.gpr.Dataset method) (mvpa.clfs.knn.Dataset method) (mvpa.clfs.lars.Dataset method) (mvpa.clfs.smlr.Dataset method) (mvpa.clfs.stats.Dataset method) (mvpa.datasets.base.Dataset method) (mvpa.datasets.eep.Dataset method) (mvpa.datasets.formats.Dataset method) (mvpa.datasets.miscfx.Dataset method) (mvpa.datasets.mri.Dataset method) (mvpa.mappers.filters.Dataset method) (mvpa.mappers.fx.Dataset method) (mvpa.mappers.procrustean.Dataset method) (mvpa.mappers.zscore.Dataset method) (mvpa.measures.anova.Dataset method) (mvpa.measures.base.Dataset method) (mvpa.measures.corrcoef.Dataset method) (mvpa.measures.glm.Dataset method) (mvpa.measures.gnbsearchlight.Dataset method) (mvpa.measures.irelief.Dataset method) (mvpa.measures.noiseperturbation.Dataset method) (mvpa.misc.data_generators.Dataset method) (mvpa.testing.clfs.Dataset method) (mvpa.testing.datasets.Dataset method) (mvpa2.misc.data_generators.Dataset method) items (mvpa.clfs.warehouse.Warehouse attribute) IterativeFeatureSelection (class in mvpa.featsel.base) (class in mvpa.featsel.ifs) (class in mvpa.featsel.rfe) IterativeRelief (class in mvpa.measures.irelief) IterativeRelief_Devel (class in mvpa.measures.irelief) IterativeReliefOnline (class in mvpa.measures.irelief) IterativeReliefOnline_Devel (class in mvpa.measures.irelief) iteritems() (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method)

K

K (mvpa.mappers.som.SimpleSOMMapper attribute) k() (mvpa.measures.irelief.IterativeRelief method) Kernel (class in mvpa.kernels) (class in mvpa.kernels.base) (class in mvpa.kernels.libsvm) (class in mvpa.kernels.sg) kernel (mvpa.clfs.gpr.GPR attribute) (mvpa.clfs.warehouse.GPR attribute)

KernelParameter (class in mvpa.base.param) keys() (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) kNN (class in mvpa.clfs.knn) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) kstest() (in module mvpa.clfs.stats)

L

l1_normed() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) l2_normed() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) Label label_voxel() (mvpa.atlases.FSLProbabilisticAtlas method) (mvpa.atlases.LabelsAtlas method) (mvpa.atlases.ReferencesAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.LabelsAtlas method) (mvpa2.atlases.ReferencesAtlas method) labels (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.transerror.ClassifierError attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) (mvpa.featsel.rfe.ClassifierError attribute) labels2chunks() (in module mvpa.misc.io) (in module mvpa.misc.io.base) labels_map (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) LabelsAtlas (class in mvpa.atlases) (class in mvpa2.atlases) LARS (class in mvpa.clfs.lars) LARSWeights (class in mvpa.clfs.lars) lastdim_columnsums_fancy_indexing() (in module mvpa.measures.gnbsearchlight) lastdim_columnsums_spmatrix() (in module mvpa.measures.gnbsearchlight) LDA (class in mvpa.clfs.gda) (class in mvpa.clfs.warehouse) Learner (class in mvpa.base.learner) (class in mvpa.clfs.base) (class in mvpa.mappers.base) (class in mvpa.measures.base) learner (mvpa.measures.base.CrossValidation attribute) least_sq_fit() (in module mvpa.misc.fx) (in module mvpa2.misc.fx) leastsq() (in module mvpa.misc.plot.topo) legendre() (in module mvpa.mappers.detrend) legendre_() (in module mvpa.mappers.detrend) length_scale (mvpa.clfs.gpr.SquaredExponentialKernel attribute) (mvpa.clfs.warehouse.SquaredExponentialKernel attribute) (mvpa.kernels.np.SquaredExponentialKernel attribute) Less1Classifier (class in mvpa.testing.clfs) level (mvpa.base.LevelLogger attribute) (mvpa.base.verbosity.LevelLogger attribute) LevelLogger (class in mvpa.base) (class in mvpa.base.verbosity) levels_listing() (mvpa.atlases.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) lfprev (mvpa.base.verbosity.Logger attribute)

LIBSVM, [1] license linear1d_gaussian_noise() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) linear_awgn() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) LinearCSVMC (class in mvpa.clfs.svm) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) LinearKernel (class in mvpa.clfs.gpr) (class in mvpa.clfs.warehouse) (class in mvpa.kernels.np) LinearLSKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.libsvm) LinearNuSVMC (class in mvpa.clfs.svm) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) LinearSGKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.sg) LinearSVMKernel (in module mvpa.clfs.svm) (in module mvpa.clfs.warehouse) (in module mvpa.testing.clfs) linregress() (in module mvpa.clfs.transerror) listing (mvpa.base.state.Collection attribute) listing() (mvpa.clfs.warehouse.Warehouse method) ListType (in module mvpa.misc.support) (in module mvpa2.misc.support) LLEMapper (class in mvpa.mappers.lle) load() (mvpa.misc.plot.lightbox.SpatialImage class method) load_datadb_demo_blockfmri() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) load_datadb_tutorial_data() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) load_example_fmri_dataset() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) locations() (mvpa.misc.io.base.SensorLocations method) (mvpa.misc.io.SensorLocations method) log10() (in module mvpa.clfs.transerror) Logger (class in mvpa.base.verbosity) LSKernel (class in mvpa.kernels.libsvm) lstsq() (in module mvpa.clfs.ridge)

M

Machine Learning MacOS X, [1], [2] mahalanobis_distance() (in module mvpa.clfs.distance) make_decorator() (in module mvpa.testing) (in module mvpa.testing.tools) make_file_map() (mvpa.misc.plot.lightbox.SpatialImage class method) make_flobs() (in module mvpa.misc.fsl) (in module mvpa.misc.fsl.flobs) manhatten_distance() (in module mvpa.clfs.distance) map2nifti() (in module mvpa.datasets.mri) MapOverlap (class in mvpa.misc.support) (class in mvpa2.misc.support) MappedClassifier (class in mvpa.clfs.meta) MappedClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base) mapper, [1] Mapper (class in mvpa.mappers.base) (class in mvpa.mappers.boxcar) (class in mvpa.mappers.detrend) (class in mvpa.mappers.filters) (class in mvpa.mappers.flatten) (class in mvpa.mappers.fx) (class in mvpa.mappers.mdp_adaptor) (class in mvpa.mappers.projection) (class in mvpa.mappers.slicing) (class in mvpa.mappers.som) (class in mvpa.mappers.wavelet) (class in mvpa.mappers.zscore) mapper (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.meta.MappedClassifier attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) mask (mvpa.misc.fsl.melodic.MelodicResults attribute) mask2slice() (in module mvpa.featsel.base) (in module mvpa.generators.splitters) (in module mvpa.mappers.slicing) (in module mvpa.misc.support) (in module mvpa2.misc.support) mask_mapper() (in module mvpa.datasets.base) (in module mvpa.mappers.flatten) match_accuracy() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) match_distribution() (in module mvpa.clfs.stats) Matern_3_2Kernel (class in mvpa.kernels.np) Matern_5_2Kernel (class in mvpa.kernels.np) Matlab matplotlib matrices (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) matrix (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) max_log_marginal_likelihood() (mvpa.clfs.model_selector.ModelSelector method) max_of_abs() (in module mvpa.mappers.fx) (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) maxcount (mvpa.base.WarningLog attribute) maxdims (mvpa.datasets.base.FlattenMapper attribute) (mvpa.datasets.eventrelated.FlattenMapper attribute) (mvpa.datasets.mri.FlattenMapper attribute) (mvpa.mappers.flatten.FlattenMapper attribute) MaximalVote (class in mvpa.clfs.meta) maxofabs_sample() (in module mvpa.clfs.warehouse) (in module mvpa.mappers.fx) mbasename() (in module mvpa.base.verbosity) McFlirtParams (class in mvpa.misc.fsl) (class in mvpa.misc.fsl.base) MCNullDist (class in mvpa.clfs.stats) MDP MDPFlowMapper (class in mvpa.mappers.mdp_adaptor) MDPNodeMapper (class in mvpa.mappers.lle) (class in mvpa.mappers.mdp_adaptor) mean_feature() (in module mvpa.mappers.fx) mean_group_feature() (in module mvpa.mappers.fx) mean_group_sample() (in module mvpa.mappers.fx) mean_match_accuracy() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) mean_min() (in module mvpa.clfs.distance) mean_mismatch_error() (in module mvpa.clfs.transerror) (in module mvpa.measures.base) (in module mvpa.measures.gnbsearchlight) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) mean_power_fx() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) mean_sample() (in module mvpa.mappers.fx) MeanPrediction (class in mvpa.clfs.meta) means (mvpa.clfs.gda.GDA attribute) (mvpa.clfs.gnb.GNB attribute) (mvpa.clfs.warehouse.GNB attribute) Measure (class in mvpa.clfs.base) (class in mvpa.measures.base) (class in mvpa.measures.ds) (class in mvpa.measures.searchlight) measure (mvpa.measures.base.ProxyMeasure attribute) (mvpa.measures.base.StaticMeasure attribute) (mvpa.measures.base.TransferMeasure attribute) MelodicResults (class in mvpa.misc.fsl.melodic) Meta-classifier method (mvpa.featsel.base.CombinedFeatureSelection attribute) metrics (mvpa.base.DebugLogger attribute) (mvpa.base.verbosity.DebugLogger attribute) microsecond (mvpa.base.report.datetime attribute) minute (mvpa.base.report.datetime attribute) misc mismatch_error() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) mkstemp() (in module mvpa.base.info) mode (mvpa.featsel.helpers.ElementSelector attribute) (mvpa.mappers.procrustean.ElementSelector attribute) (mvpa.mappers.svd.ElementSelector attribute) model (mvpa.clfs.libsvmc.SVM attribute) (mvpa.clfs.svm.SVM attribute) (mvpa.clfs.warehouse.SVM attribute) (mvpa.testing.clfs.SVM attribute) model selection, [1] ModelSelector (class in mvpa.clfs.model_selector) modular architecture monte-carlo, [1] motion correction MulticlassClassifier (class in mvpa.clfs.meta) (class in mvpa.clfs.warehouse) multiple_chunks() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) MultiStopCrit (class in mvpa.featsel.helpers) MVPA, [1] mvpa (module) MVPA toolbox for Matlab, [1] mvpa.algorithms.hyperalignment (module) mvpa.atlases (module) mvpa.base (module) mvpa.base.attributes (module) mvpa.base.collections (module) mvpa.base.config (module) mvpa.base.dataset (module) mvpa.base.dochelpers (module) mvpa.base.externals (module) mvpa.base.hdf5 (module) mvpa.base.info (module) mvpa.base.learner (module) mvpa.base.node (module) mvpa.base.param (module) mvpa.base.report (module) mvpa.base.state (module) mvpa.base.types (module) mvpa.base.verbosity (module) mvpa.clfs.base (module) mvpa.clfs.blr (module) mvpa.clfs.distance (module) mvpa.clfs.enet (module) mvpa.clfs.gda (module) mvpa.clfs.glmnet (module) mvpa.clfs.gnb (module) mvpa.clfs.gpr (module) mvpa.clfs.knn (module) mvpa.clfs.lars (module) mvpa.clfs.libsvmc (module) mvpa.clfs.meta (module) mvpa.clfs.model_selector (module) mvpa.clfs.plr (module) mvpa.clfs.ridge (module) mvpa.clfs.sg (module) mvpa.clfs.similarity (module) mvpa.clfs.skl (module) mvpa.clfs.smlr (module) mvpa.clfs.stats (module) mvpa.clfs.svm (module) mvpa.clfs.transerror (module) mvpa.clfs.warehouse (module)

mvpa.datasets.base (module) mvpa.datasets.eep (module) mvpa.datasets.eventrelated (module) mvpa.datasets.formats (module) mvpa.datasets.miscfx (module) mvpa.datasets.mri (module) mvpa.featsel.base (module) mvpa.featsel.helpers (module) mvpa.featsel.ifs (module) mvpa.featsel.rfe (module) mvpa.generators (module) mvpa.generators.partition (module) mvpa.generators.permutation (module) mvpa.generators.resampling (module) mvpa.generators.splitters (module) mvpa.kernels (module) mvpa.kernels.base (module) mvpa.kernels.libsvm (module) mvpa.kernels.np (module) mvpa.kernels.sg (module) mvpa.mappers (module) mvpa.mappers.base (module) mvpa.mappers.boxcar (module) mvpa.mappers.detrend (module) mvpa.mappers.filters (module) mvpa.mappers.flatten (module) mvpa.mappers.fx (module) mvpa.mappers.lle (module) mvpa.mappers.mdp_adaptor (module) mvpa.mappers.procrustean (module) mvpa.mappers.projection (module) mvpa.mappers.prototype (module) mvpa.mappers.slicing (module) mvpa.mappers.som (module) mvpa.mappers.svd (module) mvpa.mappers.wavelet (module) mvpa.mappers.zscore (module) mvpa.measures.anova (module) mvpa.measures.base (module) mvpa.measures.corrcoef (module) mvpa.measures.corrstability (module) mvpa.measures.ds (module) mvpa.measures.glm (module) mvpa.measures.gnbsearchlight (module) mvpa.measures.irelief (module) mvpa.measures.noiseperturbation (module) mvpa.measures.pls (module) mvpa.measures.searchlight (module) mvpa.misc.args (module) mvpa.misc.attrmap (module) mvpa.misc.bv (module) mvpa.misc.bv.base (module) mvpa.misc.cmdline (module) mvpa.misc.data_generators (module) mvpa.misc.errorfx (module) mvpa.misc.exceptions (module) mvpa.misc.fsl (module) mvpa.misc.fsl.base (module) mvpa.misc.fsl.flobs (module) mvpa.misc.fsl.melodic (module) mvpa.misc.fx (module) mvpa.misc.io (module) mvpa.misc.io.base (module) mvpa.misc.io.hamster (module) mvpa.misc.io.meg (module) mvpa.misc.neighborhood (module) mvpa.misc.plot (module) mvpa.misc.plot.base (module) mvpa.misc.plot.erp (module) mvpa.misc.plot.lightbox (module) mvpa.misc.plot.topo (module) mvpa.misc.sampleslookup (module) mvpa.misc.stats (module) mvpa.misc.support (module) mvpa.misc.transformers (module) mvpa.misc.vproperty (module) mvpa.testing (module) mvpa.testing.clfs (module) mvpa.testing.datasets (module) mvpa.testing.tools (module) mvpa.tests (module) mvpa2.atlases (module) mvpa2.misc (module) mvpa2.misc.args (module) mvpa2.misc.attrmap (module) mvpa2.misc.cmdline (module) mvpa2.misc.data_generators (module) mvpa2.misc.errorfx (module) mvpa2.misc.exceptions (module) mvpa2.misc.fx (module) mvpa2.misc.neighborhood (module) mvpa2.misc.sampleslookup (module) mvpa2.misc.stats (module) mvpa2.misc.support (module) mvpa2.misc.transformers (module) mvpa2.misc.vproperty (module) MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS

N

name (mvpa.base.attributes.Collectable attribute) (mvpa.base.collections.Collectable attribute) (mvpa.clfs.transerror.Collectable attribute) nanmean() (in module mvpa.clfs.stats) (in module mvpa.clfs.transerror) NBackHistoryStopCrit (class in mvpa.featsel.base) (class in mvpa.featsel.helpers) (class in mvpa.featsel.ifs) (class in mvpa.featsel.rfe) nchannels (mvpa.datasets.eep.EEPBin attribute) ncolumns (mvpa.misc.bv.base.ColumnData attribute) (mvpa.misc.bv.ColumnData attribute) (mvpa.misc.fsl.ColumnData attribute) (mvpa.misc.fsl.base.ColumnData attribute) (mvpa.misc.io.ColumnData attribute) (mvpa.misc.io.base.ColumnData attribute) Ndiag() (in module mvpa.clfs.gpr) Ndot() (in module mvpa.clfs.gpr) neglabels (mvpa.clfs.meta.BinaryClassifier attribute) nelements (mvpa.clfs.warehouse.FixedNElementTailSelector attribute) (mvpa.featsel.helpers.FixedNElementTailSelector attribute) (mvpa.featsel.ifs.FixedNElementTailSelector attribute) Neural Data Modality nevs (mvpa.misc.fsl.base.FslEV3 attribute) (mvpa.misc.fsl.FslEV3 attribute) next() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) nfeatures (mvpa.base.dataset.AttrDataset attribute) (mvpa.datasets.base.AttrDataset attribute) (mvpa.featsel.helpers.AttrDataset attribute) (mvpa.measures.base.AttrDataset attribute) NFoldPartitioner (class in mvpa.clfs.meta) (class in mvpa.generators.partition) (class in mvpa.misc.plot) (class in mvpa.misc.plot.base) NGroupPartitioner (class in mvpa.generators.partition) NiBabel nic (mvpa.misc.fsl.melodic.MelodicResults attribute) NIfTI NLAcholesky() (in module mvpa.clfs.gpr) NLAsolve() (in module mvpa.clfs.gpr) nnlf() (mvpa.clfs.stats.rv_semifrozen method)

Node (class in mvpa.base.learner) (class in mvpa.base.node) (class in mvpa.generators.partition) (class in mvpa.generators.permutation) (class in mvpa.generators.resampling) (class in mvpa.generators.splitters) (class in mvpa.mappers.fx) (class in mvpa.mappers.slicing) (class in mvpa.measures.base) node (mvpa.measures.base.RepeatedMeasure attribute) nodebug() (in module mvpa.testing) (in module mvpa.testing.tools) nodes (mvpa.base.node.ChainNode attribute) (mvpa.mappers.base.ChainNode attribute) (mvpa.misc.plot.ChainNode attribute) (mvpa.misc.plot.base.ChainNode attribute) NoisePerturbationSensitivity (class in mvpa.measures.noiseperturbation) noisy_2d_fx() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) Nonparametric (class in mvpa.clfs.stats) normal_feature_dataset() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) nottest() (in module mvpa.testing) (in module mvpa.testing.tools) now() (mvpa.base.report.datetime static method) nrows (mvpa.misc.bv.base.ColumnData attribute) (mvpa.misc.bv.ColumnData attribute) (mvpa.misc.fsl.ColumnData attribute) (mvpa.misc.fsl.base.ColumnData attribute) (mvpa.misc.io.ColumnData attribute) (mvpa.misc.io.base.ColumnData attribute) nsamples (mvpa.base.dataset.AttrDataset attribute) (mvpa.datasets.base.AttrDataset attribute) (mvpa.datasets.eep.EEPBin attribute) (mvpa.featsel.helpers.AttrDataset attribute) (mvpa.measures.base.AttrDataset attribute) (mvpa.misc.io.SampleAttributes attribute) (mvpa.misc.io.base.SampleAttributes attribute) nsamples_per_class (mvpa.clfs.gda.GDA attribute) NStepsStopCrit (class in mvpa.featsel.helpers) ntimepoints (mvpa.datasets.eep.EEPBin attribute) null_dist (mvpa.clfs.base.Measure attribute) (mvpa.measures.base.Measure attribute) (mvpa.measures.ds.Measure attribute) (mvpa.measures.searchlight.Measure attribute) null_prob (mvpa.clfs.base.Measure attribute) (mvpa.measures.base.Measure attribute) (mvpa.measures.ds.Measure attribute) (mvpa.measures.searchlight.Measure attribute) null_t (mvpa.clfs.base.Measure attribute) (mvpa.measures.base.Measure attribute) (mvpa.measures.ds.Measure attribute) (mvpa.measures.searchlight.Measure attribute) NullDist (class in mvpa.clfs.stats) NumPy NumpyKernel (class in mvpa.kernels) (class in mvpa.kernels.base) (class in mvpa.kernels.np)

O

O (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) obj2hdf() (in module mvpa.base.hdf5) obtain_from_dot() (mvpa.kernels.sg.RealFeatures method) OddEvenPartitioner (class in mvpa.generators.partition) (class in mvpa.testing.datasets) offsetbydepth (mvpa.base.DebugLogger attribute) (mvpa.base.verbosity.DebugLogger attribute) ok_() (in module mvpa.testing) (in module mvpa.testing.tools) OnceLogger (class in mvpa.base) (class in mvpa.base.verbosity) one_minus() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) one_minus_correlation() (in module mvpa.clfs.distance) ones() (in module mvpa.clfs.gda) (in module mvpa.clfs.gnb) OneWayAnova (class in mvpa.clfs.warehouse) (class in mvpa.measures.anova)

onsets (mvpa.misc.fsl.base.FslEV3 attribute) (mvpa.misc.fsl.FslEV3 attribute) OpenSUSE, [1] optimization Option (class in mvpa.misc.cmdline) (class in mvpa2.misc.cmdline) OptionGroup (class in mvpa.misc.cmdline) (class in mvpa2.misc.cmdline) OptionGroups (class in mvpa.misc.cmdline) (class in mvpa2.misc.cmdline) OptionParser (class in mvpa.misc.cmdline) (class in mvpa2.misc.cmdline) Options (class in mvpa.misc.cmdline) (class in mvpa2.misc.cmdline) oshape (mvpa.datasets.base.StaticFeatureSelection attribute) (mvpa.featsel.base.StaticFeatureSelection attribute) (mvpa.featsel.ifs.StaticFeatureSelection attribute) (mvpa.mappers.flatten.StaticFeatureSelection attribute) (mvpa.measures.searchlight.StaticFeatureSelection attribute) OverAxis (class in mvpa.misc.transformers) (class in mvpa2.misc.transformers)

P

p() (mvpa.clfs.stats.NullDist method) param_est (mvpa.mappers.zscore.ZScoreMapper attribute) Parameter (class in mvpa.algorithms.hyperalignment) (class in mvpa.base.param) (class in mvpa.clfs.base) (class in mvpa.clfs.gda) (class in mvpa.clfs.glmnet) (class in mvpa.clfs.gnb) (class in mvpa.clfs.gpr) (class in mvpa.clfs.meta) (class in mvpa.clfs.smlr) (class in mvpa.kernels.base) (class in mvpa.kernels.libsvm) (class in mvpa.kernels.np) (class in mvpa.kernels.sg) ParameterCollection (class in mvpa.base.state) params (mvpa.mappers.zscore.ZScoreMapper attribute) parse() (mvpa.base.externals.SmartVersion method) (mvpa.misc.support.SmartVersion method) (mvpa2.misc.support.SmartVersion method) parse_args() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) parse_status() (in module mvpa.base.verbosity) Partitioner (class in mvpa.generators.partition) partitioner (mvpa.clfs.meta.SplitClassifier attribute) (mvpa.clfs.warehouse.SplitClassifier attribute) path (mvpa.misc.fsl.melodic.MelodicResults attribute) PCAMapper (class in mvpa.mappers.mdp_adaptor) pearsonr() (in module mvpa.measures.corrcoef) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) percent_correct (mvpa.clfs.base.ConfusionMatrix attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) permutation, [1] Pioff() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) (in module mvpa.misc.plot.lightbox) Pion() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) (in module mvpa.misc.plot.lightbox) plot() (mvpa.clfs.base.ConfusionMatrix method) (mvpa.clfs.base.RegressionStatistics method) (mvpa.clfs.transerror.ConfusionMatrix method) (mvpa.clfs.transerror.ROCCurve method) (mvpa.clfs.transerror.RegressionStatistics method) (mvpa.datasets.miscfx.SequenceStats method) (mvpa.misc.fsl.FslGLMDesign method) (mvpa.misc.fsl.McFlirtParams method) (mvpa.misc.fsl.base.FslGLMDesign method) (mvpa.misc.fsl.base.McFlirtParams method) plot_bars() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plot_dataset_chunks() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plot_decision_boundary_2d() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plot_distribution_matches() (in module mvpa.clfs.stats) plot_erp() (in module mvpa.misc.plot.erp) plot_erps() (in module mvpa.misc.plot.erp) plot_err_line() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plot_feature_hist() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plot_head_outline() (in module mvpa.misc.plot.topo) plot_head_topography() (in module mvpa.misc.plot.topo) plot_lightbox() (in module mvpa.misc.plot.lightbox) plot_samples_distance() (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) plotting plotting example PLR (class in mvpa.clfs.plr) (class in mvpa.clfs.warehouse) PLS (class in mvpa.measures.pls)

pnorm_w() (in module mvpa.clfs.distance) (in module mvpa.measures.irelief) pnorm_w_python() (in module mvpa.clfs.distance) poly_detrend() (in module mvpa.mappers.detrend) PolyDetrendMapper (class in mvpa.mappers.detrend) PolyKernel (class in mvpa.kernels.np) PolyLSKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.libsvm) PolySGKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.sg) poslabels (mvpa.clfs.meta.BinaryClassifier attribute) postproc (mvpa.base.learner.Node attribute) (mvpa.base.node.Node attribute) (mvpa.generators.partition.Node attribute) (mvpa.generators.permutation.Node attribute) (mvpa.generators.resampling.Node attribute) (mvpa.generators.splitters.Node attribute) (mvpa.mappers.fx.Node attribute) (mvpa.mappers.slicing.Node attribute) (mvpa.measures.base.Node attribute) PrecomputedKernel (class in mvpa.kernels) (class in mvpa.kernels.base) PrecomputedSGKernel (class in mvpa.kernels.sg) predict() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.testing.clfs.Classifier method) PredictionsCombiner (class in mvpa.clfs.meta) print_help() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) print_registered() (mvpa.base.verbosity.SetLogger method) print_usage() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) print_version() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) printsetid (mvpa.base.verbosity.SetLogger attribute) priors (mvpa.clfs.gda.GDA attribute) (mvpa.clfs.gnb.GNB attribute) (mvpa.clfs.warehouse.GNB attribute) process() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) Processing object ProcrusteanMapper (class in mvpa.algorithms.hyperalignment) (class in mvpa.mappers.procrustean) progress tracking proj (mvpa.mappers.mdp_adaptor.ICAMapper attribute) (mvpa.mappers.mdp_adaptor.PCAMapper attribute) (mvpa.mappers.procrustean.ProjectionMapper attribute) (mvpa.mappers.projection.ProjectionMapper attribute) (mvpa.mappers.prototype.ProjectionMapper attribute) (mvpa.mappers.svd.ProjectionMapper attribute) ProjectionMapper (class in mvpa.mappers.procrustean) (class in mvpa.mappers.projection) (class in mvpa.mappers.prototype) (class in mvpa.mappers.svd) props (mvpa.datasets.eep.DataReader attribute) (mvpa.misc.io.DataReader attribute) (mvpa.misc.io.base.DataReader attribute) PrototypeMapper (class in mvpa.mappers.prototype) ProxyClassifier (class in mvpa.clfs.meta) ProxyClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base) ProxyMeasure (class in mvpa.measures.base) Publications pure_multivariate_signal() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) PyMatlab PyMVPA poster

Q

QDA (class in mvpa.clfs.gda) (class in mvpa.clfs.warehouse) query() (mvpa.measures.gnbsearchlight.IndexQueryEngine method) (mvpa.measures.searchlight.IndexQueryEngine method) (mvpa.misc.neighborhood.CachedQueryEngine method) (mvpa.misc.neighborhood.IndexQueryEngine method) (mvpa.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.IndexQueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method) query_byid() (mvpa.misc.neighborhood.CachedQueryEngine method) (mvpa.misc.neighborhood.QueryEngine method) (mvpa.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.QueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method)

QueryEngine (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood) queryengine (mvpa.measures.gnbsearchlight.BaseSearchlight attribute) (mvpa.measures.searchlight.BaseSearchlight attribute) (mvpa.misc.neighborhood.CachedQueryEngine attribute) (mvpa2.misc.neighborhood.CachedQueryEngine attribute) QueryEngineInterface (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood)

R

R r_helper() (in module mvpa.measures.gnbsearchlight) radius (mvpa.measures.gnbsearchlight.Sphere attribute) (mvpa.measures.searchlight.Sphere attribute) (mvpa.misc.neighborhood.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) raises() (in module mvpa.testing) (in module mvpa.testing.tools) random number generation random_samples() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) RangeElementSelector (class in mvpa.clfs.warehouse) (class in mvpa.featsel.helpers) rank_order() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) RationalQuadraticKernel (class in mvpa.kernels.np) RbfCSVMC (class in mvpa.clfs.svm) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) RbfKernel (class in mvpa.kernels.np) RbfLSKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.libsvm) RbfNuSVMC (class in mvpa.clfs.svm) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) RbfSGKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.sg) RbfSVMKernel (in module mvpa.clfs.svm) (in module mvpa.clfs.warehouse) (in module mvpa.testing.clfs) read() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) read_fsl_design() (in module mvpa.misc.fsl) (in module mvpa.misc.fsl.base) readline() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) readlines() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) RealFeatures (class in mvpa.kernels.sg) recommended software recon (mvpa.mappers.mdp_adaptor.ICAMapper attribute) (mvpa.mappers.mdp_adaptor.PCAMapper attribute) (mvpa.mappers.procrustean.ProjectionMapper attribute) (mvpa.mappers.projection.ProjectionMapper attribute) (mvpa.mappers.prototype.ProjectionMapper attribute) (mvpa.mappers.svd.ProjectionMapper attribute) redirecting output reference_level (mvpa.atlases.ReferencesAtlas attribute) (mvpa2.atlases.ReferencesAtlas attribute) references ReferencesAtlas (class in mvpa.atlases) (class in mvpa2.atlases) register() (mvpa.base.verbosity.SetLogger method) register_metric() (mvpa.base.DebugLogger method) (mvpa.base.verbosity.DebugLogger method) registered (mvpa.base.verbosity.SetLogger attribute) (mvpa.misc.io.hamster.Hamster attribute) RegressionAsClassifier (class in mvpa.clfs.meta) (class in mvpa.clfs.warehouse) RegressionAsClassifierSensitivityAnalyzer (class in mvpa.clfs.meta) (class in mvpa.measures.base) RegressionStatistics (class in mvpa.clfs.base) (class in mvpa.clfs.transerror) relative_rms_error() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) RelativeTime (class in mvpa.base.verbosity)

release notes, [1] releases reload() (mvpa.base.config.ConfigManager method) (mvpa.base.ConfigManager method) relvar_per_ic (mvpa.misc.fsl.melodic.MelodicResults attribute) remove_invariant_features() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) RepeatedMeasure (class in mvpa.measures.base) replace (mvpa.base.report.datetime attribute) Report (class in mvpa.base.report) repredict() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.testing.clfs.Classifier method) required software resample() (in module mvpa.mappers.filters) reseed_rng() (in module mvpa.testing) (in module mvpa.testing.datasets) (in module mvpa.testing.tools) reset() (mvpa.algorithms.hyperalignment.ClassWithCollections method) (mvpa.algorithms.hyperalignment.ConditionalAttribute method) (mvpa.base.attributes.ConditionalAttribute method) (mvpa.base.attributes.IndexedCollectable method) (mvpa.base.learner.ConditionalAttribute method) (mvpa.base.node.ClassWithCollections method) (mvpa.base.node.ConditionalAttribute method) (mvpa.base.param.IndexedCollectable method) (mvpa.base.state.ClassWithCollections method) (mvpa.base.state.Collection method) (mvpa.base.state.ConditionalAttribute method) (mvpa.base.state.IndexedCollectable method) (mvpa.clfs.base.ConditionalAttribute method) (mvpa.clfs.blr.ConditionalAttribute method) (mvpa.clfs.gda.ConditionalAttribute method) (mvpa.clfs.gnb.ConditionalAttribute method) (mvpa.clfs.gpr.ConditionalAttribute method) (mvpa.clfs.gpr.GeneralizedLinearKernel method) (mvpa.clfs.gpr.SquaredExponentialKernel method) (mvpa.clfs.knn.ConditionalAttribute method) (mvpa.clfs.meta.ClassWithCollections method) (mvpa.clfs.meta.ConditionalAttribute method) (mvpa.clfs.smlr.ConditionalAttribute method) (mvpa.clfs.stats.ClassWithCollections method) (mvpa.clfs.stats.ConditionalAttribute method) (mvpa.clfs.transerror.ClassWithCollections method) (mvpa.clfs.transerror.ConditionalAttribute method) (mvpa.clfs.transerror.SummaryStatistics method) (mvpa.clfs.warehouse.GeneralizedLinearKernel method) (mvpa.clfs.warehouse.SquaredExponentialKernel method) (mvpa.featsel.base.ConditionalAttribute method) (mvpa.featsel.helpers.ClassWithCollections method) (mvpa.featsel.helpers.ConditionalAttribute method) (mvpa.featsel.ifs.ConditionalAttribute method) (mvpa.featsel.rfe.ConditionalAttribute method) (mvpa.kernels.base.ClassWithCollections method) (mvpa.kernels.np.ConditionalAttribute method) (mvpa.kernels.np.GeneralizedLinearKernel method) (mvpa.kernels.np.SquaredExponentialKernel method) (mvpa.measures.base.ConditionalAttribute method) (mvpa.measures.glm.ConditionalAttribute method) (mvpa.measures.searchlight.ConditionalAttribute method) (mvpa.misc.transformers.ClassWithCollections method) (mvpa.misc.transformers.ConditionalAttribute method) (mvpa2.misc.transformers.ClassWithCollections method) (mvpa2.misc.transformers.ConditionalAttribute method) reset_changed_temporarily() (mvpa.base.state.ConditionalAttributesCollection method) reset_value() (mvpa.algorithms.hyperalignment.Parameter method) (mvpa.base.param.Parameter method) (mvpa.base.state.ParameterCollection method) (mvpa.clfs.base.Parameter method) (mvpa.clfs.gda.Parameter method) (mvpa.clfs.glmnet.Parameter method) (mvpa.clfs.gnb.Parameter method) (mvpa.clfs.gpr.Parameter method) (mvpa.clfs.meta.Parameter method) (mvpa.clfs.smlr.Parameter method) (mvpa.kernels.base.Parameter method) (mvpa.kernels.libsvm.Parameter method) (mvpa.kernels.np.Parameter method) (mvpa.kernels.sg.Parameter method) retrain() (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.testing.clfs.Classifier method) reuse_absolute_path() (in module mvpa.misc.support) (in module mvpa2.misc.support) reverse() (mvpa.datasets.base.ChainMapper method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.Mapper method) (mvpa.mappers.detrend.Mapper method) (mvpa.mappers.filters.Mapper method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.mappers.flatten.Mapper method) (mvpa.mappers.fx.Mapper method) (mvpa.mappers.mdp_adaptor.Mapper method) (mvpa.mappers.projection.Mapper method) (mvpa.mappers.slicing.Mapper method) (mvpa.mappers.som.Mapper method) (mvpa.mappers.wavelet.Mapper method) (mvpa.mappers.zscore.Mapper method) reverse1() (mvpa.datasets.base.ChainMapper method) (mvpa.datasets.eventrelated.BoxcarMapper method) (mvpa.datasets.mri.BoxcarMapper method) (mvpa.featsel.base.FeatureSelection method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.boxcar.Mapper method) (mvpa.mappers.detrend.Mapper method) (mvpa.mappers.filters.Mapper method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.mappers.flatten.Mapper method) (mvpa.mappers.fx.Mapper method) (mvpa.mappers.mdp_adaptor.Mapper method) (mvpa.mappers.projection.Mapper method) (mvpa.mappers.slicing.Mapper method) (mvpa.mappers.som.Mapper method) (mvpa.mappers.wavelet.Mapper method) (mvpa.mappers.zscore.Mapper method) (mvpa.misc.plot.erp.BoxcarMapper method) reverse_rank_order() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) review RFE (class in mvpa.featsel.rfe) rfe_history_to_maps() (in module mvpa.misc.support) (in module mvpa2.misc.support) RidgeReg (class in mvpa.clfs.ridge) rms_error() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) RNG ROCCurve (class in mvpa.clfs.transerror) rocs (mvpa.clfs.transerror.ROCCurve attribute) roi_ids (mvpa.measures.gnbsearchlight.BaseSearchlight attribute) (mvpa.measures.searchlight.BaseSearchlight attribute) root_mean_power_fx() (in module mvpa.clfs.transerror) (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) RPy, [1] run() (in module mvpa.tests) run_tests_using_nose() (in module mvpa.tests) rv_semifrozen (class in mvpa.clfs.stats)

S

S (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) SafeConfigParser (class in mvpa.base.config) SameSignClassifier (class in mvpa.testing.clfs) Sample Sample attribute SampleAttribute (class in mvpa.base.collections) (class in mvpa.datasets.base) SampleAttributes (class in mvpa.misc.io) (class in mvpa.misc.io.base) SampleAttributesCollection (class in mvpa.base.collections) (class in mvpa.base.dataset) (class in mvpa.datasets.base) samples (mvpa.datasets.base.HollowSamples attribute) (mvpa.testing.datasets.HollowSamples attribute) SampleSliceMapper (class in mvpa.mappers.slicing) SamplesLookup (class in mvpa.kernels.base) (class in mvpa.misc.sampleslookup) (class in mvpa2.misc.sampleslookup) save() (in module mvpa.base.dataset) (mvpa.base.ConfigManager method) (mvpa.base.config.ConfigManager method) (mvpa.base.dataset.AttrDataset method) (mvpa.base.report.Report method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) saveload_warehouse() (in module mvpa.testing.datasets) SciPy searchlight, [1] Searchlight (class in mvpa.measures.searchlight) second (mvpa.base.report.datetime attribute) second_axis_mean() (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) seed() (in module mvpa) seek() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) select_samples() (mvpa.misc.bv.base.ColumnData method) (mvpa.misc.bv.ColumnData method) (mvpa.misc.fsl.ColumnData method) (mvpa.misc.fsl.base.ColumnData method) (mvpa.misc.io.ColumnData method) (mvpa.misc.io.base.ColumnData method) selection_strategy (mvpa.generators.partition.Partitioner attribute) selectors (mvpa.featsel.base.CombinedFeatureSelection attribute) self-organizing map Sensitivity sensitivity, [1] Sensitivity (class in mvpa.clfs.enet) (class in mvpa.clfs.glmnet) (class in mvpa.clfs.gpr) (class in mvpa.clfs.lars) (class in mvpa.clfs.smlr) (class in mvpa.featsel.rfe) (class in mvpa.measures.base) Sensitivity Map sensitivity_analyzer (mvpa.clfs.warehouse.SensitivityBasedFeatureSelection attribute) (mvpa.featsel.base.SensitivityBasedFeatureSelection attribute) SensitivityBasedFeatureSelection (class in mvpa.clfs.warehouse) (class in mvpa.featsel.base) SensorLocations (class in mvpa.misc.io) (class in mvpa.misc.io.base) SequenceCollectable (class in mvpa.base.collections) SequenceStats (class in mvpa.datasets.miscfx) set() (mvpa.base.config.SafeConfigParser method) set_active_from_string() (mvpa.base.verbosity.SetLogger method) set_attr() (mvpa.algorithms.hyperalignment.Dataset method) (mvpa.clfs.base.Dataset method) (mvpa.clfs.glmnet.Dataset method) (mvpa.clfs.gpr.Dataset method) (mvpa.clfs.knn.Dataset method) (mvpa.clfs.lars.Dataset method) (mvpa.clfs.smlr.Dataset method) (mvpa.clfs.stats.Dataset method) (mvpa.datasets.base.Dataset method) (mvpa.datasets.eep.Dataset method) (mvpa.datasets.formats.Dataset method) (mvpa.datasets.miscfx.Dataset method) (mvpa.datasets.mri.Dataset method) (mvpa.mappers.filters.Dataset method) (mvpa.mappers.fx.Dataset method) (mvpa.mappers.procrustean.Dataset method) (mvpa.mappers.zscore.Dataset method) (mvpa.measures.anova.Dataset method) (mvpa.measures.base.Dataset method) (mvpa.measures.corrcoef.Dataset method) (mvpa.measures.glm.Dataset method) (mvpa.measures.gnbsearchlight.Dataset method) (mvpa.measures.irelief.Dataset method) (mvpa.measures.noiseperturbation.Dataset method) (mvpa.misc.data_generators.Dataset method) (mvpa.testing.clfs.Dataset method) (mvpa.testing.datasets.Dataset method) (mvpa2.misc.data_generators.Dataset method) set_data_dtype() (mvpa.misc.plot.lightbox.SpatialImage method) set_default() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) set_defaults() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) set_distance() (mvpa.atlases.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) set_feature_matrix() (mvpa.kernels.sg.RealFeatures method) set_feature_vector() (mvpa.kernels.sg.RealFeatures method) set_filename() (mvpa.misc.plot.lightbox.SpatialImage method) set_hyperparameters() (mvpa.clfs.blr.BLR method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.gpr.SquaredExponentialKernel method) (mvpa.clfs.warehouse.BLR method) (mvpa.clfs.warehouse.GPR method) (mvpa.clfs.warehouse.SquaredExponentialKernel method) (mvpa.kernels.np.Matern_3_2Kernel method) (mvpa.kernels.np.RationalQuadraticKernel method) (mvpa.kernels.np.SquaredExponentialKernel method) set_labels_map() (mvpa.clfs.base.ConfusionMatrix method) (mvpa.clfs.transerror.ConfusionMatrix method) set_length_check() (mvpa.base.collections.SequenceCollectable method) (mvpa.base.collections.UniformLengthCollection method) set_num_features() (mvpa.kernels.sg.RealFeatures method) set_num_vectors() (mvpa.kernels.sg.RealFeatures method) set_postproc() (mvpa.base.learner.Node method) (mvpa.base.node.Node method) (mvpa.generators.partition.Node method) (mvpa.generators.permutation.Node method) (mvpa.generators.resampling.Node method) (mvpa.generators.splitters.Node method) (mvpa.mappers.fx.Node method) (mvpa.mappers.slicing.Node method) (mvpa.measures.base.Node method) set_process_default_values() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) set_reference_level() (mvpa.atlases.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) set_space() (mvpa.base.learner.Node method) (mvpa.base.node.Node method) (mvpa.generators.partition.Node method) (mvpa.generators.permutation.Node method) (mvpa.generators.resampling.Node method) (mvpa.generators.splitters.Node method) (mvpa.mappers.fx.Node method) (mvpa.mappers.slicing.Node method) (mvpa.measures.base.Node method) set_title() (mvpa.misc.cmdline.OptionGroup method) (mvpa2.misc.cmdline.OptionGroup method) set_usage() (mvpa.misc.cmdline.OptionParser method) (mvpa2.misc.cmdline.OptionParser method) SetLogger (class in mvpa.base.verbosity) sets (mvpa.clfs.transerror.SummaryStatistics attribute) settings SGKernel (class in mvpa.kernels.sg) shape (mvpa.base.dataset.AttrDataset attribute) (mvpa.datasets.base.AttrDataset attribute) (mvpa.datasets.base.FlattenMapper attribute) (mvpa.datasets.base.HollowSamples attribute) (mvpa.datasets.eventrelated.FlattenMapper attribute) (mvpa.datasets.mri.FlattenMapper attribute) (mvpa.featsel.helpers.AttrDataset attribute) (mvpa.mappers.flatten.FlattenMapper attribute) (mvpa.measures.base.AttrDataset attribute) (mvpa.misc.plot.lightbox.SpatialImage attribute) (mvpa.testing.datasets.HollowSamples attribute) Shogun SigmoidLSKernel (class in mvpa.clfs.warehouse) (class in mvpa.kernels.libsvm) SillySensitivityAnalyzer (class in mvpa.testing.clfs) Similarity (class in mvpa.clfs.similarity) SimpleSOMMapper (class in mvpa.mappers.som)

sin_modulated() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) single_gamma_hrf() (in module mvpa.misc.fx) (in module mvpa2.misc.fx) single_or_plural() (in module mvpa.base.dochelpers) SingleDimensionSimilarity (class in mvpa.clfs.similarity) skip_if_no_external() (in module mvpa.testing) (in module mvpa.testing.tools) sklLDA (in module mvpa.clfs.warehouse) SKLLearnerAdapter (class in mvpa.clfs.skl) (class in mvpa.clfs.warehouse) SLcho_solve() (in module mvpa.clfs.gpr) SLcholesky() (in module mvpa.clfs.gpr) slicearg (mvpa.featsel.base.SliceMapper attribute) (mvpa.mappers.slicing.SliceMapper attribute) SliceMapper (class in mvpa.featsel.base) (class in mvpa.mappers.slicing) SmartVersion (class in mvpa.base.externals) (class in mvpa.misc.support) (class in mvpa2.misc.support) SMLR (class in mvpa.clfs.smlr) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) SMLRWeights (class in mvpa.clfs.smlr) (class in mvpa.clfs.warehouse) smodes (mvpa.misc.fsl.melodic.MelodicResults attribute) solve() (mvpa.clfs.model_selector.ModelSelector method) SOM sorted (mvpa.measures.gnbsearchlight.IndexQueryEngine attribute) (mvpa.measures.searchlight.IndexQueryEngine attribute) (mvpa.misc.neighborhood.IndexQueryEngine attribute) (mvpa2.misc.neighborhood.IndexQueryEngine attribute) source package space (mvpa.base.learner.Node attribute) (mvpa.base.node.Node attribute) (mvpa.generators.partition.Node attribute) (mvpa.generators.permutation.Node attribute) (mvpa.generators.resampling.Node attribute) (mvpa.generators.splitters.Node attribute) (mvpa.mappers.fx.Node attribute) (mvpa.mappers.slicing.Node attribute) (mvpa.measures.base.Node attribute) Spatial Discrimination Map (SDM) SpatialImage (class in mvpa.misc.plot.lightbox) Sphere (class in mvpa.measures.gnbsearchlight) (class in mvpa.measures.searchlight) (class in mvpa.misc.neighborhood) (class in mvpa2.misc.neighborhood) sphere_gnbsearchlight() (in module mvpa.measures.gnbsearchlight) sphere_searchlight() (in module mvpa.measures.searchlight) split_kwargs() (in module mvpa.misc.args) (in module mvpa2.misc.args) splitattr (mvpa.generators.partition.Partitioner attribute) SplitClassifier (class in mvpa.clfs.meta) (class in mvpa.clfs.warehouse) Splitter (class in mvpa.clfs.meta) (class in mvpa.generators.splitters) (class in mvpa.mappers.filters) (class in mvpa.measures.base) (class in mvpa.measures.gnbsearchlight) (class in mvpa.misc.plot) (class in mvpa.misc.plot.base) splitter (mvpa.clfs.meta.SplitClassifier attribute) (mvpa.clfs.warehouse.SplitClassifier attribute) (mvpa.measures.base.CrossValidation attribute) (mvpa.measures.base.TransferMeasure attribute) squared_euclidean_distance() (in module mvpa.clfs.distance) (in module mvpa.clfs.knn) (in module mvpa.clfs.similarity) (in module mvpa.kernels.np) (in module mvpa.misc.plot) (in module mvpa.misc.plot.base) SquaredExponentialKernel (class in mvpa.clfs.gpr) (class in mvpa.clfs.warehouse) (class in mvpa.kernels.np) StaticFeatureSelection (class in mvpa.datasets.base) (class in mvpa.featsel.base) (class in mvpa.featsel.ifs) (class in mvpa.mappers.flatten) (class in mvpa.measures.searchlight) StaticMeasure (class in mvpa.measures.base) Statistical Discrimination Map (SDM) Statistical Learning statistical testing stats (mvpa.clfs.transerror.SummaryStatistics attribute) steps (mvpa.featsel.base.NBackHistoryStopCrit attribute) (mvpa.featsel.helpers.NBackHistoryStopCrit attribute) (mvpa.featsel.helpers.NStepsStopCrit attribute) (mvpa.featsel.ifs.NBackHistoryStopCrit attribute) (mvpa.featsel.rfe.NBackHistoryStopCrit attribute) StoppingCriterion (class in mvpa.featsel.helpers) StreamlineSimilarity (class in mvpa.clfs.similarity) StringIO (class in mvpa.base.dochelpers) (class in mvpa.base.info) (class in mvpa.clfs.transerror) StringType (in module mvpa.misc.support) (in module mvpa2.misc.support) StripBoundariesSamples (class in mvpa.mappers.slicing) strptime() (mvpa.base.report.datetime static method) sub() (in module mvpa.misc.io.base) suggested software sum() (in module mvpa.clfs.gda) (in module mvpa.clfs.gnb) sum_of_abs() (in module mvpa.mappers.fx) (in module mvpa.misc.transformers) (in module mvpa2.misc.transformers) sum_sample() (in module mvpa.mappers.fx) summaries (mvpa.clfs.transerror.SummaryStatistics attribute) summary() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.clfs.base.Classifier method) (mvpa.clfs.blr.Classifier method) (mvpa.clfs.enet.Classifier method) (mvpa.clfs.gda.Classifier method) (mvpa.clfs.glmnet.Classifier method) (mvpa.clfs.gnb.Classifier method) (mvpa.clfs.gpr.Classifier method) (mvpa.clfs.knn.Classifier method) (mvpa.clfs.lars.Classifier method) (mvpa.clfs.libsvmc.SVM method) (mvpa.clfs.meta.Classifier method) (mvpa.clfs.meta.CombinedClassifier method) (mvpa.clfs.meta.ProxyClassifier method) (mvpa.clfs.meta.TreeClassifier method) (mvpa.clfs.plr.Classifier method) (mvpa.clfs.ridge.Classifier method) (mvpa.clfs.smlr.Classifier method) (mvpa.clfs.svm.SVM method) (mvpa.clfs.warehouse.SVM method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) (mvpa.testing.clfs.Classifier method) (mvpa.testing.clfs.SVM method) summary_targets() (in module mvpa.datasets.miscfx) (mvpa.base.dataset.AttrDataset method) (mvpa.datasets.base.AttrDataset method) (mvpa.featsel.helpers.AttrDataset method) (mvpa.measures.base.AttrDataset method) SummaryStatistics (class in mvpa.clfs.transerror) sumofabs_sample() (in module mvpa.mappers.fx) Supervised Support sv (mvpa.mappers.svd.SVDMapper attribute) SVD SVDMapper (class in mvpa.mappers.svd) SVM (class in mvpa.clfs.libsvmc) (class in mvpa.clfs.sg) (class in mvpa.clfs.svm) (class in mvpa.clfs.warehouse) (class in mvpa.testing.clfs) svm (mvpa.clfs.sg.SVM attribute) sweepargs() (in module mvpa.testing) SWIG

T

T (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) t0 (mvpa.datasets.eep.EEPBin attribute) table2string() (in module mvpa.base.dochelpers) (in module mvpa.clfs.transerror) (in module mvpa.datasets.miscfx) tail (mvpa.clfs.stats.NullDist attribute) TailSelector (class in mvpa.featsel.helpers) take_action() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) takes_value() (mvpa.misc.cmdline.Option method) (mvpa2.misc.cmdline.Option method) Target targets (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) TaskPLS (class in mvpa.measures.pls) tell() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) test() (in module mvpa) test_all_dependencies() (in module mvpa.base.externals) Testing Dataset text() (mvpa.base.report.Report method) textbook TextWrapper (class in mvpa.base.state) threshold (mvpa.featsel.helpers.FixedErrorThresholdStopCrit attribute) time (mvpa.base.report.datetime attribute) Time-compression timed() (in module mvpa.testing) (in module mvpa.testing.tools) timetuple (mvpa.base.report.datetime attribute) timetz (mvpa.base.report.datetime attribute) tmodes (mvpa.misc.fsl.melodic.MelodicResults attribute) to_events() (mvpa.misc.fsl.base.FslEV3 method) (mvpa.misc.fsl.FslEV3 method) to_file_map() (mvpa.misc.plot.lightbox.SpatialImage method) to_filename() (mvpa.misc.plot.lightbox.SpatialImage method)

to_files() (mvpa.misc.plot.lightbox.SpatialImage method) to_filespec() (mvpa.misc.plot.lightbox.SpatialImage method) to_lightsvm_format() (in module mvpa.datasets.formats) to_literal() (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) to_numeric() (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) toarray() (mvpa.misc.bv.base.BrainVoyagerRTC method) (mvpa.misc.bv.BrainVoyagerRTC method) (mvpa.misc.fsl.McFlirtParams method) (mvpa.misc.fsl.base.McFlirtParams method) todo tofile() (mvpa.misc.bv.base.ColumnData method) (mvpa.misc.bv.ColumnData method) (mvpa.misc.fsl.ColumnData method) (mvpa.misc.fsl.FslEV3 method) (mvpa.misc.fsl.McFlirtParams method) (mvpa.misc.fsl.base.ColumnData method) (mvpa.misc.fsl.base.FslEV3 method) (mvpa.misc.fsl.base.McFlirtParams method) (mvpa.misc.io.ColumnData method) (mvpa.misc.io.SampleAttributes method) (mvpa.misc.io.base.ColumnData method) (mvpa.misc.io.base.SampleAttributes method) TraceBack (class in mvpa.base.verbosity) train() (mvpa.base.learner.Learner method) (mvpa.clfs.base.Learner method) (mvpa.clfs.meta.PredictionsCombiner method) (mvpa.datasets.base.ChainMapper method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Learner method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.measures.base.Learner method) (mvpa.measures.gnbsearchlight.Sphere method) (mvpa.measures.searchlight.Sphere method) (mvpa.misc.neighborhood.CachedQueryEngine method) (mvpa.misc.neighborhood.QueryEngine method) (mvpa.misc.neighborhood.QueryEngineInterface method) (mvpa.misc.neighborhood.Sphere method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.QueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.neighborhood.Sphere method) traindataset (mvpa.clfs.sg.SVM attribute) trained (mvpa.clfs.base.Classifier attribute) (mvpa.clfs.blr.Classifier attribute) (mvpa.clfs.enet.Classifier attribute) (mvpa.clfs.gda.Classifier attribute) (mvpa.clfs.glmnet.Classifier attribute) (mvpa.clfs.gnb.Classifier attribute) (mvpa.clfs.gpr.Classifier attribute) (mvpa.clfs.knn.Classifier attribute) (mvpa.clfs.lars.Classifier attribute) (mvpa.clfs.meta.Classifier attribute) (mvpa.clfs.plr.Classifier attribute) (mvpa.clfs.ridge.Classifier attribute) (mvpa.clfs.smlr.Classifier attribute) (mvpa.testing.clfs.Classifier attribute) Training Dataset TransferMeasure (class in mvpa.measures.base) transfermeasure (mvpa.measures.base.CrossValidation attribute) transform_with_boxcar() (in module mvpa.misc.support) (in module mvpa2.misc.support) trapz() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) TreeClassifier (class in mvpa.clfs.meta) truevar_per_ic (mvpa.misc.fsl.melodic.MelodicResults attribute) truncate() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) TuebingenMEG (class in mvpa.misc.io.meg) TuebingenMEGSensorLocations (class in mvpa.misc.io) (class in mvpa.misc.io.base) TupleType (in module mvpa.misc.support) (in module mvpa2.misc.support) Tutorial, [1], [2], [3], [4], [5], [6], [7], [8], [9] tzinfo (mvpa.base.report.datetime attribute) tzname (mvpa.base.report.datetime attribute)

U

uattrs (mvpa.mappers.fx.FxMapper attribute) Ubuntu UC (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) ulabels (mvpa.clfs.gda.GDA attribute) (mvpa.clfs.gnb.GNB attribute) (mvpa.clfs.warehouse.GNB attribute) UniformLengthCollection (class in mvpa.base.collections) unique (mvpa.base.collections.SequenceCollectable attribute) unique_combinations() (in module mvpa.misc.support) (in module mvpa2.misc.support) uniquechunks (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) uniquetargets (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute)

unittests untrain() (mvpa.base.learner.Learner method) (mvpa.clfs.base.Learner method) (mvpa.clfs.transerror.ClassifierError method) (mvpa.datasets.base.ChainMapper method) (mvpa.featsel.rfe.ClassifierError method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.Learner method) (mvpa.mappers.flatten.ChainMapper method) (mvpa.measures.base.Learner method) (mvpa.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.CachedQueryEngine method) update() (mvpa.base.collections.Collection method) update_header() (mvpa.misc.plot.lightbox.SpatialImage method) UT (mvpa.algorithms.hyperalignment.Dataset attribute) (mvpa.clfs.base.Dataset attribute) (mvpa.clfs.glmnet.Dataset attribute) (mvpa.clfs.gpr.Dataset attribute) (mvpa.clfs.knn.Dataset attribute) (mvpa.clfs.lars.Dataset attribute) (mvpa.clfs.smlr.Dataset attribute) (mvpa.clfs.stats.Dataset attribute) (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.eep.Dataset attribute) (mvpa.datasets.formats.Dataset attribute) (mvpa.datasets.miscfx.Dataset attribute) (mvpa.datasets.mri.Dataset attribute) (mvpa.mappers.filters.Dataset attribute) (mvpa.mappers.fx.Dataset attribute) (mvpa.mappers.procrustean.Dataset attribute) (mvpa.mappers.zscore.Dataset attribute) (mvpa.measures.anova.Dataset attribute) (mvpa.measures.base.Dataset attribute) (mvpa.measures.corrcoef.Dataset attribute) (mvpa.measures.glm.Dataset attribute) (mvpa.measures.gnbsearchlight.Dataset attribute) (mvpa.measures.irelief.Dataset attribute) (mvpa.measures.noiseperturbation.Dataset attribute) (mvpa.misc.data_generators.Dataset attribute) (mvpa.testing.clfs.Dataset attribute) (mvpa.testing.datasets.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) utcfromtimestamp() (mvpa.base.report.datetime static method) utcnow() (mvpa.base.report.datetime static method) utcoffset (mvpa.base.report.datetime attribute) utctimetuple (mvpa.base.report.datetime attribute)

V

value (mvpa.algorithms.hyperalignment.Parameter attribute) (mvpa.base.attributes.Collectable attribute) (mvpa.base.collections.Collectable attribute) (mvpa.base.param.Parameter attribute) (mvpa.clfs.base.Parameter attribute) (mvpa.clfs.gda.Parameter attribute) (mvpa.clfs.glmnet.Parameter attribute) (mvpa.clfs.gnb.Parameter attribute) (mvpa.clfs.gpr.Parameter attribute) (mvpa.clfs.meta.Parameter attribute) (mvpa.clfs.smlr.Parameter attribute) (mvpa.clfs.transerror.Collectable attribute) (mvpa.kernels.base.Parameter attribute) (mvpa.kernels.libsvm.Parameter attribute) (mvpa.kernels.np.Parameter attribute) (mvpa.kernels.sg.Parameter attribute) value2idx() (in module mvpa.datasets.eventrelated) (in module mvpa.misc.support) (in module mvpa2.misc.support) values() (mvpa.clfs.base.AttributeMap method) (mvpa.clfs.meta.AttributeMap method) (mvpa.datasets.formats.AttributeMap method) (mvpa.measures.base.AttributeMap method) (mvpa.misc.attrmap.AttributeMap method) (mvpa.misc.plot.AttributeMap method) (mvpa.misc.plot.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) var (mvpa.mappers.mdp_adaptor.PCAMapper attribute) variance_1sv() (in module mvpa.misc.errorfx) (in module mvpa2.misc.errorfx) variances (mvpa.clfs.gnb.GNB attribute) (mvpa.clfs.warehouse.GNB attribute)

verbosity, [1] Version (class in mvpa.misc.support) (class in mvpa2.misc.support) version_to_tuple() (in module mvpa.misc.support) (in module mvpa2.misc.support) view() (mvpa.datasets.base.HollowSamples method) (mvpa.testing.datasets.HollowSamples method) VProperty (class in mvpa.misc.vproperty) (class in mvpa2.misc.vproperty) vstack() (in module mvpa.base.dataset) (in module mvpa.mappers.filters) (in module mvpa.measures.anova) (in module mvpa.measures.base)

W

Warehouse (class in mvpa.clfs.warehouse) warning, [1] WarningLog (class in mvpa.base) WaveletPacketMapper (class in mvpa.mappers.wavelet) WaveletTransformationMapper (class in mvpa.mappers.wavelet) Weight Vector weights (mvpa.clfs.enet.ENET attribute) (mvpa.clfs.lars.LARS attribute) (mvpa.clfs.smlr.SMLR attribute) (mvpa.clfs.warehouse.SMLR attribute) (mvpa.testing.clfs.SMLR attribute) which_set() (mvpa.base.state.Collection method) Who is using it? Windows

Windows installer with_setup() (in module mvpa.testing) (in module mvpa.testing.tools) with_tempfile() (in module mvpa.testing) (in module mvpa.testing.tools) wr1996() (in module mvpa.misc.data_generators) (in module mvpa.testing.datasets) (in module mvpa2.misc.data_generators) wrap() (mvpa.base.state.TextWrapper method) write (mvpa.base.report.Report attribute) write() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) writelines() (mvpa.base.dochelpers.StringIO method) (mvpa.base.info.StringIO method) (mvpa.clfs.transerror.StringIO method) WTF (class in mvpa.base.info) wtf() (in module mvpa) (in module mvpa.base.info)

X

XAVRSensorLocations (class in mvpa.misc.io) (class in mvpa.misc.io.base) xml() (mvpa.base.report.Report method)

xunique_combinations() (in module mvpa.misc.support) (in module mvpa2.misc.support)

Z

zeros() (in module mvpa.clfs.gda) (in module mvpa.clfs.gnb) zscore() (in module mvpa.algorithms.hyperalignment) (in module mvpa.mappers.zscore)

ZScoreMapper (class in mvpa.mappers.zscore)