mvpa2.featsel.base.SensitivityBasedFeatureSelection

class mvpa2.featsel.base.SensitivityBasedFeatureSelection(sensitivity_analyzer, feature_selector=FractionTailSelector() fraction=0.050000, train_analyzer=True, **kwargs)

Feature elimination.

A FeaturewiseMeasure is used to compute sensitivity maps given a certain dataset. These sensitivity maps are in turn used to discard unimportant features.

Notes

Available conditional attributes:

• calling_time+: None
• raw_results: None
• sensitivity: None
• trained_dataset: None
• trained_nsamples+: None
• trained_targets+: None
• training_time+: None

(Conditional attributes enabled by default suffixed with +)

Methods

reverse1(data)

Initialize feature selection

Parameters:

sensitivity_analyzer : FeaturewiseMeasure

sensitivity analyzer to come up with sensitivity

feature_selector : Functor

Given a sensitivity map it has to return the ids of those features that should be kept.

train_analyzer : bool

Flag whether to train the sensitivity analyzer on the input dataset during train(). If False, the employed sensitivity measure has to be already trained before.

enable_ca : None or list of str

Names of the conditional attributes which should be enabled in addition to the default ones

disable_ca : None or list of str

Names of the conditional attributes which should be disabled

filler : optional

Value to fill empty entries upon reverse operation

auto_train : bool

Flag whether the learner will automatically train itself on the input dataset when called untrained.

force_train : bool

Flag whether the learner will enforce training on the input dataset upon every call.

space : str, optional

Name of the ‘processing space’. The actual meaning of this argument heavily depends on the sub-class implementation. In general, this is a trigger that tells the node to compute and store information about the input data that is “interesting” in the context of the corresponding processing in the output dataset.

pass_attr : str, list of str|tuple, optional

Additional attributes to pass on to an output dataset. Attributes can be taken from all three attribute collections of an input dataset (sa, fa, a – see Dataset.get_attr()), or from the collection of conditional attributes (ca) of a node instance. Corresponding collection name prefixes should be used to identify attributes, e.g. ‘ca.null_prob’ for the conditional attribute ‘null_prob’, or ‘fa.stats’ for the feature attribute stats. In addition to a plain attribute identifier it is possible to use a tuple to trigger more complex operations. The first tuple element is the attribute identifier, as described before. The second element is the name of the target attribute collection (sa, fa, or a). The third element is the axis number of a multidimensional array that shall be swapped with the current first axis. The fourth element is a new name that shall be used for an attribute in the output dataset. Example: (‘ca.null_prob’, ‘fa’, 1, ‘pvalues’) will take the conditional attribute ‘null_prob’ and store it as a feature attribute ‘pvalues’, while swapping the first and second axes. Simplified instructions can be given by leaving out consecutive tuple elements starting from the end.

postproc : Node instance, optional

Node to perform post-processing of results. This node is applied in __call__() to perform a final processing step on the to be result dataset. If None, nothing is done.

descr : str

Description of the instance

Methods

reverse1(data)

sensitivity_analyzer

Measure which was used to do selection