PyMVPA User Manual

• Introduction
  • What this Manual is NOT
  • A bit of History
  • How to cite PyMVPA
  • Authors and Contributors
  • Acknowledgements
• Installation
  • Dependencies
  • Installing Binary Packages
  • Building from Source
• Where To Get Support
  • Reporting A Bug
• Tutorial Introduction to PyMVPA
  • Tutorial Prerequisites
  • Dataset basics and concepts
  • Getting data in shape
  • Classifiers – All Alike, Yet Different
  • Looking here and there – Searchlights
  • Classifiers that do more – Meta Classifiers
  • Classification Model Parameters – Sensitivity Analysis
  • Event-related Data Analysis
  • Multi-dimensional Searchlights
  • Working with OpenFMRI.org data
  • WiP: The Earth Is Round – Significance Testing
• Example Analyses and Scripts
  • Preprocessing
  • Analysis strategies and Background
  • Visualization
  • Integrate with 3rd-party software
  • Special interest and Miscellaneous
• Command line interface
  • Documentation of the main pymvpa2 command
  • Sub-command documentation
  • Example scripts
  • For developers
• Miscellaneous
  • Related API documentation
  • Managing (Custom) Configurations
  • Progress Tracking
  • Additional Little Helpers
  • FSL Bindings
• Frequently Asked Questions
  • General
  • Data import, export and storage
  • Data preprocessing
  • Data analysis
• Glossary
• Development Changelog
  • Releases
• References
• Module Reference
  • Entry Point
  • Basic Facilities
  • Datasets: Input, Output, Storage and Preprocessing
  • Mappers: Data Transformations
  • Generators: Repetitive Data Processing
  • Classifiers and Errors
  • Measures: Searchlights and Sensitivties
  • Feature Selection
  • Additional Algorithms
  • Miscellaneous
  • Testing
• License
  • 3rd Party Code